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The CRIT framework for identifying cross patterns in systems biology and application to chemogenomics

Biological data is often tabular but finding statistically valid connections between entities in a sequence of tables can be problematic - for example, connecting particular entities in a drug property table to gene properties in a second table, using a third table associating genes with drugs. Here...

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Detalles Bibliográficos
Autores principales: Gianoulis, Tara A, Agarwal, Ashish, Snyder, Michael, Gerstein, Mark B
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129682/
https://www.ncbi.nlm.nih.gov/pubmed/21453526
http://dx.doi.org/10.1186/gb-2011-12-3-r32
Descripción
Sumario:Biological data is often tabular but finding statistically valid connections between entities in a sequence of tables can be problematic - for example, connecting particular entities in a drug property table to gene properties in a second table, using a third table associating genes with drugs. Here we present an approach (CRIT) to find connections such as these and show how it can be applied in a variety of genomic contexts including chemogenomics data.