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Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy

We present an imaging method, dSLIM, that combines a novel deconvolution algorithm with spatial light interference microscopy (SLIM), to achieve 2.3x resolution enhancement with respect to the diffraction limit. By exploiting the sparsity of the phase images, which is prominent in many biological im...

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Detalles Bibliográficos
Autores principales: Babacan, S. Derin, Wang, Zhuo, Do, Minh, Popescu, Gabriel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Optical Society of America 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3130569/
https://www.ncbi.nlm.nih.gov/pubmed/21750760
http://dx.doi.org/10.1364/BOE.2.001815
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author Babacan, S. Derin
Wang, Zhuo
Do, Minh
Popescu, Gabriel
author_facet Babacan, S. Derin
Wang, Zhuo
Do, Minh
Popescu, Gabriel
author_sort Babacan, S. Derin
collection PubMed
description We present an imaging method, dSLIM, that combines a novel deconvolution algorithm with spatial light interference microscopy (SLIM), to achieve 2.3x resolution enhancement with respect to the diffraction limit. By exploiting the sparsity of the phase images, which is prominent in many biological imaging applications, and modeling of the image formation via complex fields, the very fine structures can be recovered which were blurred by the optics. With experiments on SLIM images, we demonstrate that significant improvements in spatial resolution can be obtained by the proposed approach. Moreover, the resolution improvement leads to higher accuracy in monitoring dynamic activity over time. Experiments with primary brain cells, i.e. neurons and glial cells, reveal new subdiffraction structures and motions. This new information can be used for studying vesicle transport in neurons, which may shed light on dynamic cell functioning. Finally, the method is flexible to incorporate a wide range of image models for different applications and can be utilized for all imaging modalities acquiring complex field images.
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spelling pubmed-31305692011-07-12 Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy Babacan, S. Derin Wang, Zhuo Do, Minh Popescu, Gabriel Biomed Opt Express Microscopy We present an imaging method, dSLIM, that combines a novel deconvolution algorithm with spatial light interference microscopy (SLIM), to achieve 2.3x resolution enhancement with respect to the diffraction limit. By exploiting the sparsity of the phase images, which is prominent in many biological imaging applications, and modeling of the image formation via complex fields, the very fine structures can be recovered which were blurred by the optics. With experiments on SLIM images, we demonstrate that significant improvements in spatial resolution can be obtained by the proposed approach. Moreover, the resolution improvement leads to higher accuracy in monitoring dynamic activity over time. Experiments with primary brain cells, i.e. neurons and glial cells, reveal new subdiffraction structures and motions. This new information can be used for studying vesicle transport in neurons, which may shed light on dynamic cell functioning. Finally, the method is flexible to incorporate a wide range of image models for different applications and can be utilized for all imaging modalities acquiring complex field images. Optical Society of America 2011-06-02 /pmc/articles/PMC3130569/ /pubmed/21750760 http://dx.doi.org/10.1364/BOE.2.001815 Text en ©2011 Optical Society of America http://creativecommons.org/licenses/by-nc-nd/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License, which permits download and redistribution, provided that the original work is properly cited. This license restricts the article from being modified or used commercially.
spellingShingle Microscopy
Babacan, S. Derin
Wang, Zhuo
Do, Minh
Popescu, Gabriel
Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy
title Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy
title_full Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy
title_fullStr Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy
title_full_unstemmed Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy
title_short Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy
title_sort cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy
topic Microscopy
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3130569/
https://www.ncbi.nlm.nih.gov/pubmed/21750760
http://dx.doi.org/10.1364/BOE.2.001815
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