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Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria

Identifying essential factors in cellular interactions and organized movement of cells is important in predicting behavioral phenotypes exhibited by many bacterial cells. We chose to study Myxococcus xanthus, a soil bacterium whose individual cell behavior changes while in groups, leading to spontan...

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Detalles Bibliográficos
Autores principales: Hendrata, Melisa, Yang, Zhe, Lux, Renate, Shi, Wenyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3139613/
https://www.ncbi.nlm.nih.gov/pubmed/21811570
http://dx.doi.org/10.1371/journal.pone.0022169
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author Hendrata, Melisa
Yang, Zhe
Lux, Renate
Shi, Wenyuan
author_facet Hendrata, Melisa
Yang, Zhe
Lux, Renate
Shi, Wenyuan
author_sort Hendrata, Melisa
collection PubMed
description Identifying essential factors in cellular interactions and organized movement of cells is important in predicting behavioral phenotypes exhibited by many bacterial cells. We chose to study Myxococcus xanthus, a soil bacterium whose individual cell behavior changes while in groups, leading to spontaneous formation of aggregation center during the early stage of fruiting body development. In this paper, we develop a cell-based computational model that solely relies on experimentally determined parameters to investigate minimal elements required to produce the observed social behaviors in M. xanthus. The model verifies previously known essential parameters and identifies one novel parameter, the active turning, which we define as the ability and tendency of a cell to turn to a certain angle without the presence of any obvious external factors. The simulation is able to produce both gliding pattern and spontaneous aggregation center formation as observed in experiments. The model is tested against several known M. xanthus mutants and our modification of parameter values relevant for the individual mutants produces good phenotypic agreements. This outcome indicates the strong predictive potential of our model for the social behaviors of uncharacterized mutants and their expected phenotypes during development.
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spelling pubmed-31396132011-08-02 Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria Hendrata, Melisa Yang, Zhe Lux, Renate Shi, Wenyuan PLoS One Research Article Identifying essential factors in cellular interactions and organized movement of cells is important in predicting behavioral phenotypes exhibited by many bacterial cells. We chose to study Myxococcus xanthus, a soil bacterium whose individual cell behavior changes while in groups, leading to spontaneous formation of aggregation center during the early stage of fruiting body development. In this paper, we develop a cell-based computational model that solely relies on experimentally determined parameters to investigate minimal elements required to produce the observed social behaviors in M. xanthus. The model verifies previously known essential parameters and identifies one novel parameter, the active turning, which we define as the ability and tendency of a cell to turn to a certain angle without the presence of any obvious external factors. The simulation is able to produce both gliding pattern and spontaneous aggregation center formation as observed in experiments. The model is tested against several known M. xanthus mutants and our modification of parameter values relevant for the individual mutants produces good phenotypic agreements. This outcome indicates the strong predictive potential of our model for the social behaviors of uncharacterized mutants and their expected phenotypes during development. Public Library of Science 2011-07-19 /pmc/articles/PMC3139613/ /pubmed/21811570 http://dx.doi.org/10.1371/journal.pone.0022169 Text en Hendrata et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Hendrata, Melisa
Yang, Zhe
Lux, Renate
Shi, Wenyuan
Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria
title Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria
title_full Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria
title_fullStr Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria
title_full_unstemmed Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria
title_short Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria
title_sort experimentally guided computational model discovers important elements for social behavior in myxobacteria
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3139613/
https://www.ncbi.nlm.nih.gov/pubmed/21811570
http://dx.doi.org/10.1371/journal.pone.0022169
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