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Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria
Identifying essential factors in cellular interactions and organized movement of cells is important in predicting behavioral phenotypes exhibited by many bacterial cells. We chose to study Myxococcus xanthus, a soil bacterium whose individual cell behavior changes while in groups, leading to spontan...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3139613/ https://www.ncbi.nlm.nih.gov/pubmed/21811570 http://dx.doi.org/10.1371/journal.pone.0022169 |
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author | Hendrata, Melisa Yang, Zhe Lux, Renate Shi, Wenyuan |
author_facet | Hendrata, Melisa Yang, Zhe Lux, Renate Shi, Wenyuan |
author_sort | Hendrata, Melisa |
collection | PubMed |
description | Identifying essential factors in cellular interactions and organized movement of cells is important in predicting behavioral phenotypes exhibited by many bacterial cells. We chose to study Myxococcus xanthus, a soil bacterium whose individual cell behavior changes while in groups, leading to spontaneous formation of aggregation center during the early stage of fruiting body development. In this paper, we develop a cell-based computational model that solely relies on experimentally determined parameters to investigate minimal elements required to produce the observed social behaviors in M. xanthus. The model verifies previously known essential parameters and identifies one novel parameter, the active turning, which we define as the ability and tendency of a cell to turn to a certain angle without the presence of any obvious external factors. The simulation is able to produce both gliding pattern and spontaneous aggregation center formation as observed in experiments. The model is tested against several known M. xanthus mutants and our modification of parameter values relevant for the individual mutants produces good phenotypic agreements. This outcome indicates the strong predictive potential of our model for the social behaviors of uncharacterized mutants and their expected phenotypes during development. |
format | Online Article Text |
id | pubmed-3139613 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-31396132011-08-02 Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria Hendrata, Melisa Yang, Zhe Lux, Renate Shi, Wenyuan PLoS One Research Article Identifying essential factors in cellular interactions and organized movement of cells is important in predicting behavioral phenotypes exhibited by many bacterial cells. We chose to study Myxococcus xanthus, a soil bacterium whose individual cell behavior changes while in groups, leading to spontaneous formation of aggregation center during the early stage of fruiting body development. In this paper, we develop a cell-based computational model that solely relies on experimentally determined parameters to investigate minimal elements required to produce the observed social behaviors in M. xanthus. The model verifies previously known essential parameters and identifies one novel parameter, the active turning, which we define as the ability and tendency of a cell to turn to a certain angle without the presence of any obvious external factors. The simulation is able to produce both gliding pattern and spontaneous aggregation center formation as observed in experiments. The model is tested against several known M. xanthus mutants and our modification of parameter values relevant for the individual mutants produces good phenotypic agreements. This outcome indicates the strong predictive potential of our model for the social behaviors of uncharacterized mutants and their expected phenotypes during development. Public Library of Science 2011-07-19 /pmc/articles/PMC3139613/ /pubmed/21811570 http://dx.doi.org/10.1371/journal.pone.0022169 Text en Hendrata et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Hendrata, Melisa Yang, Zhe Lux, Renate Shi, Wenyuan Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria |
title | Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria |
title_full | Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria |
title_fullStr | Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria |
title_full_unstemmed | Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria |
title_short | Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria |
title_sort | experimentally guided computational model discovers important elements for social behavior in myxobacteria |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3139613/ https://www.ncbi.nlm.nih.gov/pubmed/21811570 http://dx.doi.org/10.1371/journal.pone.0022169 |
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