YADA: a tool for taking the most out of high-resolution spectra

Summary: YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a p...

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Detalles Bibliográficos
Autores principales: Carvalho, Paulo C., Xu, Tao, Han, Xuemei, Cociorva, Daniel, Barbosa, Valmir C., Yates, John R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3140806/
https://www.ncbi.nlm.nih.gov/pubmed/19684088
http://dx.doi.org/10.1093/bioinformatics/btp489
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author Carvalho, Paulo C.
Xu, Tao
Han, Xuemei
Cociorva, Daniel
Barbosa, Valmir C.
Yates, John R.
author_facet Carvalho, Paulo C.
Xu, Tao
Han, Xuemei
Cociorva, Daniel
Barbosa, Valmir C.
Yates, John R.
author_sort Carvalho, Paulo C.
collection PubMed
description Summary: YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a pipeline consisting of ProLuCID and DTASelect for analyzing large-scale middle-down proteomics data. Availability: http://fields.scripps.edu/yada Contact: paulo@pcarvalho.com Supplementary information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-31408062011-07-21 YADA: a tool for taking the most out of high-resolution spectra Carvalho, Paulo C. Xu, Tao Han, Xuemei Cociorva, Daniel Barbosa, Valmir C. Yates, John R. Bioinformatics Applications Note Summary: YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a pipeline consisting of ProLuCID and DTASelect for analyzing large-scale middle-down proteomics data. Availability: http://fields.scripps.edu/yada Contact: paulo@pcarvalho.com Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2009-10-15 2009-08-14 /pmc/articles/PMC3140806/ /pubmed/19684088 http://dx.doi.org/10.1093/bioinformatics/btp489 Text en © The Author(s) 2009. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Carvalho, Paulo C.
Xu, Tao
Han, Xuemei
Cociorva, Daniel
Barbosa, Valmir C.
Yates, John R.
YADA: a tool for taking the most out of high-resolution spectra
title YADA: a tool for taking the most out of high-resolution spectra
title_full YADA: a tool for taking the most out of high-resolution spectra
title_fullStr YADA: a tool for taking the most out of high-resolution spectra
title_full_unstemmed YADA: a tool for taking the most out of high-resolution spectra
title_short YADA: a tool for taking the most out of high-resolution spectra
title_sort yada: a tool for taking the most out of high-resolution spectra
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3140806/
https://www.ncbi.nlm.nih.gov/pubmed/19684088
http://dx.doi.org/10.1093/bioinformatics/btp489
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