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GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease
BACKGROUND: Epidemiologic evidence suggests a heritable component to risk for sudden cardiac arrest independent of risk for myocardial infarction. Recent candidate gene association studies for community sudden cardiac arrests have focused on a limited number of biological pathways and yielded confli...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3141757/ https://www.ncbi.nlm.nih.gov/pubmed/21658281 http://dx.doi.org/10.1186/1471-2261-11-29 |
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author | Aouizerat, Bradley E Vittinghoff, Eric Musone, Stacy L Pawlikowska, Ludmila Kwok, Pui-Yan Olgin, Jeffrey E Tseng, Zian H |
author_facet | Aouizerat, Bradley E Vittinghoff, Eric Musone, Stacy L Pawlikowska, Ludmila Kwok, Pui-Yan Olgin, Jeffrey E Tseng, Zian H |
author_sort | Aouizerat, Bradley E |
collection | PubMed |
description | BACKGROUND: Epidemiologic evidence suggests a heritable component to risk for sudden cardiac arrest independent of risk for myocardial infarction. Recent candidate gene association studies for community sudden cardiac arrests have focused on a limited number of biological pathways and yielded conflicting results. We sought to identify novel gene associations for sudden cardiac arrest in patients with coronary artery disease by performing a genome-wide association study. METHODS: Tagging SNPs (n = 338,328) spanning the genome were typed in a case-control study comparing 89 patients with coronary artery disease and sudden cardiac arrest due to ventricular tachycardia or ventricular fibrillation to 520 healthy controls. RESULTS: Fourteen SNPs including 7 SNPs among 7 genes (ACYP2, AP1G2, ESR1, DGES2, GRIA1, KCTD1, ZNF385B) were associated with sudden cardiac arrest (all p < 1.30 × 10(-7)), following Bonferroni correction and adjustment for population substructure, age, and sex; genetic variation in ESR1 (p = 2.62 × 10(-8); Odds Ratio [OR] = 1.43, 95% confidence interval [CI]:1.277, 1.596) has previously been established as a risk factor for cardiovascular disease. In tandem, the role of 9 genes for monogenic long QT syndrome (LQT1-9) was assessed, yielding evidence of association with CACNA1C (LQT8; p = 3.09 × 10(-4); OR = 1.18, 95% CI:1.079, 1.290). We also assessed 4 recently published gene associations for sudden cardiac arrest, validating NOS1AP (p = 4.50 × 10(-2), OR = 1.15, 95% CI:1.003, 1.326), CSMD2 (p = 6.6 × 10(-3), OR = 2.27, 95% CI:1.681, 2.859), and AGTR1 (p = 3.00 × 10(-3), OR = 1.13, 95% CI:1.042, 1.215). CONCLUSION: We demonstrate 11 gene associations for sudden cardiac arrest due to ventricular tachycardia/ventricular fibrillation in patients with coronary artery disease. Validation studies in independent cohorts and functional studies are required to confirm these associations. |
format | Online Article Text |
id | pubmed-3141757 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-31417572011-07-23 GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease Aouizerat, Bradley E Vittinghoff, Eric Musone, Stacy L Pawlikowska, Ludmila Kwok, Pui-Yan Olgin, Jeffrey E Tseng, Zian H BMC Cardiovasc Disord Research Article BACKGROUND: Epidemiologic evidence suggests a heritable component to risk for sudden cardiac arrest independent of risk for myocardial infarction. Recent candidate gene association studies for community sudden cardiac arrests have focused on a limited number of biological pathways and yielded conflicting results. We sought to identify novel gene associations for sudden cardiac arrest in patients with coronary artery disease by performing a genome-wide association study. METHODS: Tagging SNPs (n = 338,328) spanning the genome were typed in a case-control study comparing 89 patients with coronary artery disease and sudden cardiac arrest due to ventricular tachycardia or ventricular fibrillation to 520 healthy controls. RESULTS: Fourteen SNPs including 7 SNPs among 7 genes (ACYP2, AP1G2, ESR1, DGES2, GRIA1, KCTD1, ZNF385B) were associated with sudden cardiac arrest (all p < 1.30 × 10(-7)), following Bonferroni correction and adjustment for population substructure, age, and sex; genetic variation in ESR1 (p = 2.62 × 10(-8); Odds Ratio [OR] = 1.43, 95% confidence interval [CI]:1.277, 1.596) has previously been established as a risk factor for cardiovascular disease. In tandem, the role of 9 genes for monogenic long QT syndrome (LQT1-9) was assessed, yielding evidence of association with CACNA1C (LQT8; p = 3.09 × 10(-4); OR = 1.18, 95% CI:1.079, 1.290). We also assessed 4 recently published gene associations for sudden cardiac arrest, validating NOS1AP (p = 4.50 × 10(-2), OR = 1.15, 95% CI:1.003, 1.326), CSMD2 (p = 6.6 × 10(-3), OR = 2.27, 95% CI:1.681, 2.859), and AGTR1 (p = 3.00 × 10(-3), OR = 1.13, 95% CI:1.042, 1.215). CONCLUSION: We demonstrate 11 gene associations for sudden cardiac arrest due to ventricular tachycardia/ventricular fibrillation in patients with coronary artery disease. Validation studies in independent cohorts and functional studies are required to confirm these associations. BioMed Central 2011-06-10 /pmc/articles/PMC3141757/ /pubmed/21658281 http://dx.doi.org/10.1186/1471-2261-11-29 Text en Copyright ©2011 Aouizerat et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Aouizerat, Bradley E Vittinghoff, Eric Musone, Stacy L Pawlikowska, Ludmila Kwok, Pui-Yan Olgin, Jeffrey E Tseng, Zian H GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease |
title | GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease |
title_full | GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease |
title_fullStr | GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease |
title_full_unstemmed | GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease |
title_short | GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease |
title_sort | gwas for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3141757/ https://www.ncbi.nlm.nih.gov/pubmed/21658281 http://dx.doi.org/10.1186/1471-2261-11-29 |
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