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The Barcode of Life Data Portal: Bridging the Biodiversity Informatics Divide for DNA Barcoding

With the volume of molecular sequence data that is systematically being generated globally, there is a need for centralized resources for data exploration and analytics. DNA Barcode initiatives are on track to generate a compendium of molecular sequence–based signatures for identifying animals and p...

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Detalles Bibliográficos
Autores principales: Sarkar, Indra Neil, Trizna, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3144886/
https://www.ncbi.nlm.nih.gov/pubmed/21818249
http://dx.doi.org/10.1371/journal.pone.0014689
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author Sarkar, Indra Neil
Trizna, Michael
author_facet Sarkar, Indra Neil
Trizna, Michael
author_sort Sarkar, Indra Neil
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description With the volume of molecular sequence data that is systematically being generated globally, there is a need for centralized resources for data exploration and analytics. DNA Barcode initiatives are on track to generate a compendium of molecular sequence–based signatures for identifying animals and plants. To date, the range of available data exploration and analytic tools to explore these data have only been available in a boutique form—often representing a frustrating hurdle for many researchers that may not necessarily have resources to install or implement algorithms described by the analytic community. The Barcode of Life Data Portal (BDP) is a first step towards integrating the latest biodiversity informatics innovations with molecular sequence data from DNA barcoding. Through establishment of community driven standards, based on discussion with the Data Analysis Working Group (DAWG) of the Consortium for the Barcode of Life (CBOL), the BDP provides an infrastructure for incorporation of existing and next-generation DNA barcode analytic applications in an open forum.
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spelling pubmed-31448862011-08-04 The Barcode of Life Data Portal: Bridging the Biodiversity Informatics Divide for DNA Barcoding Sarkar, Indra Neil Trizna, Michael PLoS One Research Article With the volume of molecular sequence data that is systematically being generated globally, there is a need for centralized resources for data exploration and analytics. DNA Barcode initiatives are on track to generate a compendium of molecular sequence–based signatures for identifying animals and plants. To date, the range of available data exploration and analytic tools to explore these data have only been available in a boutique form—often representing a frustrating hurdle for many researchers that may not necessarily have resources to install or implement algorithms described by the analytic community. The Barcode of Life Data Portal (BDP) is a first step towards integrating the latest biodiversity informatics innovations with molecular sequence data from DNA barcoding. Through establishment of community driven standards, based on discussion with the Data Analysis Working Group (DAWG) of the Consortium for the Barcode of Life (CBOL), the BDP provides an infrastructure for incorporation of existing and next-generation DNA barcode analytic applications in an open forum. Public Library of Science 2011-07-27 /pmc/articles/PMC3144886/ /pubmed/21818249 http://dx.doi.org/10.1371/journal.pone.0014689 Text en This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. https://creativecommons.org/publicdomain/zero/1.0/ This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.
spellingShingle Research Article
Sarkar, Indra Neil
Trizna, Michael
The Barcode of Life Data Portal: Bridging the Biodiversity Informatics Divide for DNA Barcoding
title The Barcode of Life Data Portal: Bridging the Biodiversity Informatics Divide for DNA Barcoding
title_full The Barcode of Life Data Portal: Bridging the Biodiversity Informatics Divide for DNA Barcoding
title_fullStr The Barcode of Life Data Portal: Bridging the Biodiversity Informatics Divide for DNA Barcoding
title_full_unstemmed The Barcode of Life Data Portal: Bridging the Biodiversity Informatics Divide for DNA Barcoding
title_short The Barcode of Life Data Portal: Bridging the Biodiversity Informatics Divide for DNA Barcoding
title_sort barcode of life data portal: bridging the biodiversity informatics divide for dna barcoding
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3144886/
https://www.ncbi.nlm.nih.gov/pubmed/21818249
http://dx.doi.org/10.1371/journal.pone.0014689
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