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Genetic Variation of HvCBF Genes and Their Association with Salinity Tolerance in Tibetan Annual Wild Barley

The evaluation of both the genetic variation and the identification of salinity tolerant accessions of Tibetan annual wild barley (hereafter referred to as Tibetan barley) (Hordeum vulgare L. ssp. Spontaneum and H. vulgare L. ssp. agriocrithum) are essential for discovering and exploiting novel alle...

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Autores principales: Wu, Dezhi, Qiu, Long, Xu, Lulu, Ye, Lingzhen, Chen, Mingxian, Sun, Dongfa, Chen, Zhonghua, Zhang, Haitao, Jin, Xiaoli, Dai, Fei, Zhang, Guoping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3145780/
https://www.ncbi.nlm.nih.gov/pubmed/21829562
http://dx.doi.org/10.1371/journal.pone.0022938
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author Wu, Dezhi
Qiu, Long
Xu, Lulu
Ye, Lingzhen
Chen, Mingxian
Sun, Dongfa
Chen, Zhonghua
Zhang, Haitao
Jin, Xiaoli
Dai, Fei
Zhang, Guoping
author_facet Wu, Dezhi
Qiu, Long
Xu, Lulu
Ye, Lingzhen
Chen, Mingxian
Sun, Dongfa
Chen, Zhonghua
Zhang, Haitao
Jin, Xiaoli
Dai, Fei
Zhang, Guoping
author_sort Wu, Dezhi
collection PubMed
description The evaluation of both the genetic variation and the identification of salinity tolerant accessions of Tibetan annual wild barley (hereafter referred to as Tibetan barley) (Hordeum vulgare L. ssp. Spontaneum and H. vulgare L. ssp. agriocrithum) are essential for discovering and exploiting novel alleles involved in salinity tolerance. In this study, we examined tissue dry biomass and the Na(+) and K(+) contents of 188 Tibetan barley accessions in response to salt stress. We investigated the genetic variation of transcription factors HvCBF1, HvCBF3 and HvCBF4 within these accessions, conducting association analysis between these three genes and the respective genotypic salt tolerance. Salt stress significantly reduced shoot and root dry weight by 27.6% to 73.1% in the Tibetan barley lines. HvCBF1, HvCBF3 and HvCBF4 showed diverse sequence variation in amplicon as evident by the identification of single nucleotide polymorphisms (SNPs) and 3, 8 and 13 haplotypes, respectively. Furthermore, the decay of Linkage disequilibrium (LD) of chromosome 5 was 8.9 cM (r(2)<0.1). Marker bpb-4891 and haplotype 13 (Ps 610) of the HvCBF4 gene were significantly (P<0.05) and highly significantly (P<0.001) associated with salt tolerance. However, HvCBF1 and HvCBF3 genes were not associated with salinity tolerance. The accessions from haplotype 13 of the HvCBF4 gene showed high salinity tolerance, maintaining significantly lower Na(+)/K(+) ratios and higher dry weight. It is thus proposed that these Tibetan barley accessions could be of value for enhancing salinity tolerance in cultivated barley.
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spelling pubmed-31457802011-08-09 Genetic Variation of HvCBF Genes and Their Association with Salinity Tolerance in Tibetan Annual Wild Barley Wu, Dezhi Qiu, Long Xu, Lulu Ye, Lingzhen Chen, Mingxian Sun, Dongfa Chen, Zhonghua Zhang, Haitao Jin, Xiaoli Dai, Fei Zhang, Guoping PLoS One Research Article The evaluation of both the genetic variation and the identification of salinity tolerant accessions of Tibetan annual wild barley (hereafter referred to as Tibetan barley) (Hordeum vulgare L. ssp. Spontaneum and H. vulgare L. ssp. agriocrithum) are essential for discovering and exploiting novel alleles involved in salinity tolerance. In this study, we examined tissue dry biomass and the Na(+) and K(+) contents of 188 Tibetan barley accessions in response to salt stress. We investigated the genetic variation of transcription factors HvCBF1, HvCBF3 and HvCBF4 within these accessions, conducting association analysis between these three genes and the respective genotypic salt tolerance. Salt stress significantly reduced shoot and root dry weight by 27.6% to 73.1% in the Tibetan barley lines. HvCBF1, HvCBF3 and HvCBF4 showed diverse sequence variation in amplicon as evident by the identification of single nucleotide polymorphisms (SNPs) and 3, 8 and 13 haplotypes, respectively. Furthermore, the decay of Linkage disequilibrium (LD) of chromosome 5 was 8.9 cM (r(2)<0.1). Marker bpb-4891 and haplotype 13 (Ps 610) of the HvCBF4 gene were significantly (P<0.05) and highly significantly (P<0.001) associated with salt tolerance. However, HvCBF1 and HvCBF3 genes were not associated with salinity tolerance. The accessions from haplotype 13 of the HvCBF4 gene showed high salinity tolerance, maintaining significantly lower Na(+)/K(+) ratios and higher dry weight. It is thus proposed that these Tibetan barley accessions could be of value for enhancing salinity tolerance in cultivated barley. Public Library of Science 2011-07-28 /pmc/articles/PMC3145780/ /pubmed/21829562 http://dx.doi.org/10.1371/journal.pone.0022938 Text en Wu et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Wu, Dezhi
Qiu, Long
Xu, Lulu
Ye, Lingzhen
Chen, Mingxian
Sun, Dongfa
Chen, Zhonghua
Zhang, Haitao
Jin, Xiaoli
Dai, Fei
Zhang, Guoping
Genetic Variation of HvCBF Genes and Their Association with Salinity Tolerance in Tibetan Annual Wild Barley
title Genetic Variation of HvCBF Genes and Their Association with Salinity Tolerance in Tibetan Annual Wild Barley
title_full Genetic Variation of HvCBF Genes and Their Association with Salinity Tolerance in Tibetan Annual Wild Barley
title_fullStr Genetic Variation of HvCBF Genes and Their Association with Salinity Tolerance in Tibetan Annual Wild Barley
title_full_unstemmed Genetic Variation of HvCBF Genes and Their Association with Salinity Tolerance in Tibetan Annual Wild Barley
title_short Genetic Variation of HvCBF Genes and Their Association with Salinity Tolerance in Tibetan Annual Wild Barley
title_sort genetic variation of hvcbf genes and their association with salinity tolerance in tibetan annual wild barley
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3145780/
https://www.ncbi.nlm.nih.gov/pubmed/21829562
http://dx.doi.org/10.1371/journal.pone.0022938
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