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GenNet: A Platform for Hybrid Network Experiments

We describe General Network (GenNet), a software plugin for the real time experimental interface (RTXI) dynamic clamp system that allows for straightforward and flexible implementation of hybrid network experiments. This extension to RTXI allows for hybrid networks that contain an arbitrary number o...

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Detalles Bibliográficos
Autores principales: Kispersky, Tilman J., Economo, Michael N., Randeria, Pratik, White, John A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Research Foundation 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3146038/
https://www.ncbi.nlm.nih.gov/pubmed/21845179
http://dx.doi.org/10.3389/fninf.2011.00011
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author Kispersky, Tilman J.
Economo, Michael N.
Randeria, Pratik
White, John A.
author_facet Kispersky, Tilman J.
Economo, Michael N.
Randeria, Pratik
White, John A.
author_sort Kispersky, Tilman J.
collection PubMed
description We describe General Network (GenNet), a software plugin for the real time experimental interface (RTXI) dynamic clamp system that allows for straightforward and flexible implementation of hybrid network experiments. This extension to RTXI allows for hybrid networks that contain an arbitrary number of simulated and real neurons, significantly improving upon previous solutions that were limited, particularly by the number of cells supported. The benefits of this system include the ability to rapidly and easily set up and perform scalable experiments with hybrid networks and the ability to scan through ranges of parameters. We present instructions for installing, running and using GenNet for hybrid network experiments and provide several example uses of the system.
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spelling pubmed-31460382011-08-15 GenNet: A Platform for Hybrid Network Experiments Kispersky, Tilman J. Economo, Michael N. Randeria, Pratik White, John A. Front Neuroinform Neuroscience We describe General Network (GenNet), a software plugin for the real time experimental interface (RTXI) dynamic clamp system that allows for straightforward and flexible implementation of hybrid network experiments. This extension to RTXI allows for hybrid networks that contain an arbitrary number of simulated and real neurons, significantly improving upon previous solutions that were limited, particularly by the number of cells supported. The benefits of this system include the ability to rapidly and easily set up and perform scalable experiments with hybrid networks and the ability to scan through ranges of parameters. We present instructions for installing, running and using GenNet for hybrid network experiments and provide several example uses of the system. Frontiers Research Foundation 2011-07-26 /pmc/articles/PMC3146038/ /pubmed/21845179 http://dx.doi.org/10.3389/fninf.2011.00011 Text en Copyright © 2011 Kispersky, Economo, Randeria and White. http://www.frontiersin.org/licenseagreement This is an open-access article subject to a non-exclusive license between the authors and Frontiers Media SA, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and other Frontiers conditions are complied with.
spellingShingle Neuroscience
Kispersky, Tilman J.
Economo, Michael N.
Randeria, Pratik
White, John A.
GenNet: A Platform for Hybrid Network Experiments
title GenNet: A Platform for Hybrid Network Experiments
title_full GenNet: A Platform for Hybrid Network Experiments
title_fullStr GenNet: A Platform for Hybrid Network Experiments
title_full_unstemmed GenNet: A Platform for Hybrid Network Experiments
title_short GenNet: A Platform for Hybrid Network Experiments
title_sort gennet: a platform for hybrid network experiments
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3146038/
https://www.ncbi.nlm.nih.gov/pubmed/21845179
http://dx.doi.org/10.3389/fninf.2011.00011
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