Cargando…

A large scale comparative genomic analysis reveals insertion sites for newly acquired genomic islands in bacterial genomes

BACKGROUND: Bacterial virulence enhancement and drug resistance are major threats to public health worldwide. Interestingly, newly acquired genomic islands (GIs) from horizontal transfer between different bacteria strains were found in Vibrio cholerae, Streptococcus suis, and Mycobacterium tuberculo...

Descripción completa

Detalles Bibliográficos
Autores principales:	Du, Pengcheng, Yang, Yinxue, Wang, Haiying, Liu, Di, Gao, George F, Chen, Chen
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3148964/ https://www.ncbi.nlm.nih.gov/pubmed/21672261 http://dx.doi.org/10.1186/1471-2180-11-135

Ejemplares similares

n-Gram characterization of genomic islands in bacterial genomes
por: Pavlović-Lažetić, Gordana M., et al.
Publicado: (2009)

Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli
por: Lee, Heewook, et al.
Publicado: (2016)

GIST: Genomic island suite of tools for predicting genomic islands in genomic sequences
por: Hasan, Mohammad Shabbir, et al.
Publicado: (2012)

A non-viral genome editing platform for site-specific insertion of large transgenes
por: Chaudhari, Namrata, et al.
Publicado: (2020)

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data
por: Hawkey, Jane, et al.
Publicado: (2015)

Comparative genomic hybridizations reveal absence of large Streptomyces coelicolor genomic islands in Streptomyces lividans
por: Jayapal, Karthik P, et al.
Publicado: (2007)

Large-Scale Comparative Genomic Ranking of Taxonomically Restricted Genes (TRGs) in Bacterial and Archaeal Genomes
por: Wilson, Gareth A., et al.
Publicado: (2007)

Distribution of MGEs and their insertion sites in the Macaca mulatta genome
por: Rawal, Kamal, et al.
Publicado: (2012)

Identification and characterization of MGEs and their insertion sites in the gorilla genome
por: Rawal, Kamal, et al.
Publicado: (2013)

Approaches to querying bacterial genomes with transposon-insertion sequencing
por: Barquist, Lars, et al.
Publicado: (2013)

2SigFinder: the combined use of small-scale and large-scale statistical testing for genomic island detection from a single genome
por: Kong, Rui, et al.
Publicado: (2020)

Prediction of Genomic Islands in Three Bacterial Pathogens of Pneumonia
por: Guo, Feng-Biao, et al.
Publicado: (2012)

Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks
por: Bertelli, Claire, et al.
Publicado: (2022)

Large-Scale Genomic Analysis Suggests a Neutral Punctuated Dynamics of Transposable Elements in Bacterial Genomes
por: Iranzo, Jaime, et al.
Publicado: (2014)

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
por: Bertelli, Claire, et al.
Publicado: (2017)

Targeted Large-Scale Deletion of Bacterial Genomes Using CRISPR-Nickases
por: Standage-Beier, Kylie, et al.
Publicado: (2015)

An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes
por: Perez-Sepulveda, Blanca M., et al.
Publicado: (2021)

From a large-scale genomic analysis of insertion sequences to insights into their regulatory roles in prokaryotes
por: Tempel, Sebastien, et al.
Publicado: (2022)

Genome editing through large insertion leads to the skipping of targeted exon
por: Uddin, Borhan, et al.
Publicado: (2015)

Genome-wide analysis of mobile genetic element insertion sites
por: Rawal, Kamal, et al.
Publicado: (2011)

Retrovirus insertion site analysis of LGL leukemia patient genomes
por: Li, Weiling, et al.
Publicado: (2019)

Insertion sequence elements-mediated structural variations in bacterial genomes
por: Nzabarushimana, Etienne, et al.
Publicado: (2018)

Quantitative assessment of insertion sequence impact on bacterial genome architecture
por: Adams, Mark D., et al.
Publicado: (2016)

Polar Effects of Transposon Insertion into a Minimal Bacterial Genome
por: Hutchison, Clyde A., et al.
Publicado: (2019)

Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scale
por: Barrera, Víctor, et al.
Publicado: (2012)

xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria
por: Bush, Eliot C., et al.
Publicado: (2018)

Genomic islands: tools of bacterial horizontal gene transfer and evolution
por: Juhas, Mario, et al.
Publicado: (2009)

Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis
por: Pucker, Boas, et al.
Publicado: (2021)

Large-scale recoding of a bacterial genome by iterative recombineering of synthetic DNA
por: Lau, Yu Heng, et al.
Publicado: (2017)

First large-scale genomic prediction in the honey bee
por: Bernstein, Richard, et al.
Publicado: (2023)

Mammalian-specific genomic functions: Newly acquired traits generated by genomic imprinting and LTR retrotransposon-derived genes in mammals
por: KANEKO-ISHINO, Tomoko, et al.
Publicado: (2015)

Genomic Islands in Mycoplasmas
por: Citti, Christine, et al.
Publicado: (2020)

Characterization of large-scale genomic differences in the first complete human genome
por: Yang, Xiangyu, et al.
Publicado: (2023)

Secondary Chromosomal Attachment Site and Tandem Integration of the Mobilizable Salmonella Genomic Island 1
por: Doublet, Benoît, et al.
Publicado: (2008)

Ultra-fast genome comparison for large-scale genomic experiments
por: Pérez-Wohlfeil, Esteban, et al.
Publicado: (2019)

HTLV-1 inserts an ectopic CTCF-binding site into the human genome
por: Satou, Yorifumi, et al.
Publicado: (2015)

Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands
por: Bohlin, Jon, et al.
Publicado: (2012)

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas
por: Freel, Kelle C., et al.
Publicado: (2015)

Development of a database system for mapping insertional mutations onto the mouse genome with large-scale experimental data
por: Yang, Wenwei, et al.
Publicado: (2009)

Plasmid-Assisted Horizontal Transfer of a Large lsa(E)-Carrying Genomic Island in Enterococcus faecalis
por: Shan, Xinxin, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_gsar8lnc7b7s9opok21q9afqo4