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Mean Field Strategies Induce Unrealistic Non-Linearities in Calcium Puffs
Mean field models are often useful approximations to biological systems, but sometimes, they can yield misleading results. In this work, we compare mean field approaches with stochastic models of intracellular calcium release. In particular, we concentrate on calcium signals generated by the concert...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Research Foundation
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3150724/ https://www.ncbi.nlm.nih.gov/pubmed/21869877 http://dx.doi.org/10.3389/fphys.2011.00046 |
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author | Solovey, Guillermo Fraiman, Daniel Dawson, Silvina Ponce |
author_facet | Solovey, Guillermo Fraiman, Daniel Dawson, Silvina Ponce |
author_sort | Solovey, Guillermo |
collection | PubMed |
description | Mean field models are often useful approximations to biological systems, but sometimes, they can yield misleading results. In this work, we compare mean field approaches with stochastic models of intracellular calcium release. In particular, we concentrate on calcium signals generated by the concerted opening of several clustered channels (calcium puffs). To this end we simulate calcium puffs numerically and then try to reproduce features of the resulting calcium distribution using mean field models were all the channels open and close simultaneously. We show that an unrealistic non-linear relationship between the current and the number of open channels is needed to reproduce the simulated puffs. Furthermore, a single channel current which is five times smaller than the one of the stochastic simulations is also needed. Our study sheds light on the importance of the stochastic kinetics of the calcium release channel activity to estimate the release fluxes. |
format | Online Article Text |
id | pubmed-3150724 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Frontiers Research Foundation |
record_format | MEDLINE/PubMed |
spelling | pubmed-31507242011-08-25 Mean Field Strategies Induce Unrealistic Non-Linearities in Calcium Puffs Solovey, Guillermo Fraiman, Daniel Dawson, Silvina Ponce Front Physiol Physiology Mean field models are often useful approximations to biological systems, but sometimes, they can yield misleading results. In this work, we compare mean field approaches with stochastic models of intracellular calcium release. In particular, we concentrate on calcium signals generated by the concerted opening of several clustered channels (calcium puffs). To this end we simulate calcium puffs numerically and then try to reproduce features of the resulting calcium distribution using mean field models were all the channels open and close simultaneously. We show that an unrealistic non-linear relationship between the current and the number of open channels is needed to reproduce the simulated puffs. Furthermore, a single channel current which is five times smaller than the one of the stochastic simulations is also needed. Our study sheds light on the importance of the stochastic kinetics of the calcium release channel activity to estimate the release fluxes. Frontiers Research Foundation 2011-08-01 /pmc/articles/PMC3150724/ /pubmed/21869877 http://dx.doi.org/10.3389/fphys.2011.00046 Text en Copyright © 2011 Solovey, Fraiman and Dawson. http://www.frontiersin.org/licenseagreement This is an open-access article subject to a non-exclusive license between the authors and Frontiers Media SA, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and other Frontiers conditions are complied with. |
spellingShingle | Physiology Solovey, Guillermo Fraiman, Daniel Dawson, Silvina Ponce Mean Field Strategies Induce Unrealistic Non-Linearities in Calcium Puffs |
title | Mean Field Strategies Induce Unrealistic Non-Linearities in Calcium Puffs |
title_full | Mean Field Strategies Induce Unrealistic Non-Linearities in Calcium Puffs |
title_fullStr | Mean Field Strategies Induce Unrealistic Non-Linearities in Calcium Puffs |
title_full_unstemmed | Mean Field Strategies Induce Unrealistic Non-Linearities in Calcium Puffs |
title_short | Mean Field Strategies Induce Unrealistic Non-Linearities in Calcium Puffs |
title_sort | mean field strategies induce unrealistic non-linearities in calcium puffs |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3150724/ https://www.ncbi.nlm.nih.gov/pubmed/21869877 http://dx.doi.org/10.3389/fphys.2011.00046 |
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