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Information Diversity in Structure and Dynamics of Simulated Neuronal Networks
Neuronal networks exhibit a wide diversity of structures, which contributes to the diversity of the dynamics therein. The presented work applies an information theoretic framework to simultaneously analyze structure and dynamics in neuronal networks. Information diversity within the structure and dy...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Research Foundation
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3151619/ https://www.ncbi.nlm.nih.gov/pubmed/21852970 http://dx.doi.org/10.3389/fncom.2011.00026 |
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author | Mäki-Marttunen, Tuomo Aćimović, Jugoslava Nykter, Matti Kesseli, Juha Ruohonen, Keijo Yli-Harja, Olli Linne, Marja-Leena |
author_facet | Mäki-Marttunen, Tuomo Aćimović, Jugoslava Nykter, Matti Kesseli, Juha Ruohonen, Keijo Yli-Harja, Olli Linne, Marja-Leena |
author_sort | Mäki-Marttunen, Tuomo |
collection | PubMed |
description | Neuronal networks exhibit a wide diversity of structures, which contributes to the diversity of the dynamics therein. The presented work applies an information theoretic framework to simultaneously analyze structure and dynamics in neuronal networks. Information diversity within the structure and dynamics of a neuronal network is studied using the normalized compression distance. To describe the structure, a scheme for generating distance-dependent networks with identical in-degree distribution but variable strength of dependence on distance is presented. The resulting network structure classes possess differing path length and clustering coefficient distributions. In parallel, comparable realistic neuronal networks are generated with NETMORPH simulator and similar analysis is done on them. To describe the dynamics, network spike trains are simulated using different network structures and their bursting behaviors are analyzed. For the simulation of the network activity the Izhikevich model of spiking neurons is used together with the Tsodyks model of dynamical synapses. We show that the structure of the simulated neuronal networks affects the spontaneous bursting activity when measured with bursting frequency and a set of intraburst measures: the more locally connected networks produce more and longer bursts than the more random networks. The information diversity of the structure of a network is greatest in the most locally connected networks, smallest in random networks, and somewhere in between in the networks between order and disorder. As for the dynamics, the most locally connected networks and some of the in-between networks produce the most complex intraburst spike trains. The same result also holds for sparser of the two considered network densities in the case of full spike trains. |
format | Online Article Text |
id | pubmed-3151619 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Frontiers Research Foundation |
record_format | MEDLINE/PubMed |
spelling | pubmed-31516192011-08-18 Information Diversity in Structure and Dynamics of Simulated Neuronal Networks Mäki-Marttunen, Tuomo Aćimović, Jugoslava Nykter, Matti Kesseli, Juha Ruohonen, Keijo Yli-Harja, Olli Linne, Marja-Leena Front Comput Neurosci Neuroscience Neuronal networks exhibit a wide diversity of structures, which contributes to the diversity of the dynamics therein. The presented work applies an information theoretic framework to simultaneously analyze structure and dynamics in neuronal networks. Information diversity within the structure and dynamics of a neuronal network is studied using the normalized compression distance. To describe the structure, a scheme for generating distance-dependent networks with identical in-degree distribution but variable strength of dependence on distance is presented. The resulting network structure classes possess differing path length and clustering coefficient distributions. In parallel, comparable realistic neuronal networks are generated with NETMORPH simulator and similar analysis is done on them. To describe the dynamics, network spike trains are simulated using different network structures and their bursting behaviors are analyzed. For the simulation of the network activity the Izhikevich model of spiking neurons is used together with the Tsodyks model of dynamical synapses. We show that the structure of the simulated neuronal networks affects the spontaneous bursting activity when measured with bursting frequency and a set of intraburst measures: the more locally connected networks produce more and longer bursts than the more random networks. The information diversity of the structure of a network is greatest in the most locally connected networks, smallest in random networks, and somewhere in between in the networks between order and disorder. As for the dynamics, the most locally connected networks and some of the in-between networks produce the most complex intraburst spike trains. The same result also holds for sparser of the two considered network densities in the case of full spike trains. Frontiers Research Foundation 2011-06-01 /pmc/articles/PMC3151619/ /pubmed/21852970 http://dx.doi.org/10.3389/fncom.2011.00026 Text en Copyright © 2011 Mäki-Marttunen, Aćimović, Nykter, Kesseli, Ruohonen, Yli-Harja and Linne. http://www.frontiersin.org/licenseagreement This is an open-access article subject to a non-exclusive license between the authors and Frontiers Media SA, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and other Frontiers conditions are complied with. |
spellingShingle | Neuroscience Mäki-Marttunen, Tuomo Aćimović, Jugoslava Nykter, Matti Kesseli, Juha Ruohonen, Keijo Yli-Harja, Olli Linne, Marja-Leena Information Diversity in Structure and Dynamics of Simulated Neuronal Networks |
title | Information Diversity in Structure and Dynamics of Simulated Neuronal Networks |
title_full | Information Diversity in Structure and Dynamics of Simulated Neuronal Networks |
title_fullStr | Information Diversity in Structure and Dynamics of Simulated Neuronal Networks |
title_full_unstemmed | Information Diversity in Structure and Dynamics of Simulated Neuronal Networks |
title_short | Information Diversity in Structure and Dynamics of Simulated Neuronal Networks |
title_sort | information diversity in structure and dynamics of simulated neuronal networks |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3151619/ https://www.ncbi.nlm.nih.gov/pubmed/21852970 http://dx.doi.org/10.3389/fncom.2011.00026 |
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