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S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures

With numerous new quantum chemistry methods being developed in recent years and the promise of even more new methods to be developed in the near future, it is clearly critical that highly accurate, well-balanced, reference data for many different atomic and molecular properties be available for the...

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Autores principales: Řezáč, Jan, Riley, Kevin E., Hobza, Pavel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2011
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3152974/
https://www.ncbi.nlm.nih.gov/pubmed/21836824
http://dx.doi.org/10.1021/ct2002946
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author Řezáč, Jan
Riley, Kevin E.
Hobza, Pavel
author_facet Řezáč, Jan
Riley, Kevin E.
Hobza, Pavel
author_sort Řezáč, Jan
collection PubMed
description With numerous new quantum chemistry methods being developed in recent years and the promise of even more new methods to be developed in the near future, it is clearly critical that highly accurate, well-balanced, reference data for many different atomic and molecular properties be available for the parametrization and validation of these methods. One area of research that is of particular importance in many areas of chemistry, biology, and material science is the study of noncovalent interactions. Because these interactions are often strongly influenced by correlation effects, it is necessary to use computationally expensive high-order wave function methods to describe them accurately. Here, we present a large new database of interaction energies calculated using an accurate CCSD(T)/CBS scheme. Data are presented for 66 molecular complexes, at their reference equilibrium geometries and at 8 points systematically exploring their dissociation curves; in total, the database contains 594 points: 66 at equilibrium geometries, and 528 in dissociation curves. The data set is designed to cover the most common types of noncovalent interactions in biomolecules, while keeping a balanced representation of dispersion and electrostatic contributions. The data set is therefore well suited for testing and development of methods applicable to bioorganic systems. In addition to the benchmark CCSD(T) results, we also provide decompositions of the interaction energies by means of DFT-SAPT calculations. The data set was used to test several correlated QM methods, including those parametrized specifically for noncovalent interactions. Among these, the SCS-MI-CCSD method outperforms all other tested methods, with a root-mean-square error of 0.08 kcal/mol for the S66 data set.
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spelling pubmed-31529742011-08-09 S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures Řezáč, Jan Riley, Kevin E. Hobza, Pavel J Chem Theory Comput With numerous new quantum chemistry methods being developed in recent years and the promise of even more new methods to be developed in the near future, it is clearly critical that highly accurate, well-balanced, reference data for many different atomic and molecular properties be available for the parametrization and validation of these methods. One area of research that is of particular importance in many areas of chemistry, biology, and material science is the study of noncovalent interactions. Because these interactions are often strongly influenced by correlation effects, it is necessary to use computationally expensive high-order wave function methods to describe them accurately. Here, we present a large new database of interaction energies calculated using an accurate CCSD(T)/CBS scheme. Data are presented for 66 molecular complexes, at their reference equilibrium geometries and at 8 points systematically exploring their dissociation curves; in total, the database contains 594 points: 66 at equilibrium geometries, and 528 in dissociation curves. The data set is designed to cover the most common types of noncovalent interactions in biomolecules, while keeping a balanced representation of dispersion and electrostatic contributions. The data set is therefore well suited for testing and development of methods applicable to bioorganic systems. In addition to the benchmark CCSD(T) results, we also provide decompositions of the interaction energies by means of DFT-SAPT calculations. The data set was used to test several correlated QM methods, including those parametrized specifically for noncovalent interactions. Among these, the SCS-MI-CCSD method outperforms all other tested methods, with a root-mean-square error of 0.08 kcal/mol for the S66 data set. American Chemical Society 2011-07-01 2011-08-09 /pmc/articles/PMC3152974/ /pubmed/21836824 http://dx.doi.org/10.1021/ct2002946 Text en Copyright © 2011 American Chemical Society http://pubs.acs.org This is an open-access article distributed under the ACS AuthorChoice Terms & Conditions. Any use of this article, must conform to the terms of that license which are available at http://pubs.acs.org.
spellingShingle Řezáč, Jan
Riley, Kevin E.
Hobza, Pavel
S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures
title S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures
title_full S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures
title_fullStr S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures
title_full_unstemmed S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures
title_short S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures
title_sort s66: a well-balanced database of benchmark interaction energies relevant to biomolecular structures
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3152974/
https://www.ncbi.nlm.nih.gov/pubmed/21836824
http://dx.doi.org/10.1021/ct2002946
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