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Common polymorphisms in human lysyl oxidase genes are not associated with the adolescent idiopathic scoliosis phenotype
BACKGROUND: Although adolescent idiopathic scoliosis affects approximately 3% of adolescents, the genetic contributions have proven difficult to identify. Work in model organisms, including zebrafish, chickens, and mice, has implicated the lysyl oxidase family of enzymes in the development of scolio...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3154146/ https://www.ncbi.nlm.nih.gov/pubmed/21740577 http://dx.doi.org/10.1186/1471-2350-12-92 |
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author | McGregor, Tracy L Gurnett, Christina A Dobbs, Matthew B Wise, Carol A Morcuende, Jose A Morgan, Thomas M Menon, Ramkumar Muglia, Louis J |
author_facet | McGregor, Tracy L Gurnett, Christina A Dobbs, Matthew B Wise, Carol A Morcuende, Jose A Morgan, Thomas M Menon, Ramkumar Muglia, Louis J |
author_sort | McGregor, Tracy L |
collection | PubMed |
description | BACKGROUND: Although adolescent idiopathic scoliosis affects approximately 3% of adolescents, the genetic contributions have proven difficult to identify. Work in model organisms, including zebrafish, chickens, and mice, has implicated the lysyl oxidase family of enzymes in the development of scoliosis. We hypothesized that common polymorphisms in the five human lysyl oxidase genes (LOX, LOXL1, LOXL2, LOXL3, and LOXL4) may be associated with the phenotype of adolescent idiopathic scoliosis. METHODS: This was a case-control genetic association study. A total of 112 coding and tag SNPs in LOX, LOXL1, LOXL2, LOXL3, and LOXL4 were genotyped in a discovery cohort of 138 cases and 411 controls. Genotypes were tested for association with adolescent idiopathic scoliosis by logistic regression with a two degree of freedom genotypic model and gender as a covariate. Fourteen SNPs with p < 0.1 in the discovery phase were genotyped in an independent replication cohort of 400 cases and 506 controls. RESULTS: No evidence for significant association was found between coding or tag SNPs in LOX, LOXL1, LOXL2, LOXL3, and LOXL4 and the phenotype of adolescent idiopathic scoliosis. CONCLUSIONS: Despite suggestive evidence in model organisms, common variants and known coding SNPs in the five human lysyl oxidase genes do not confer increased genotypic risk for adolescent idiopathic scoliosis. The above methodology does not address rare variants or individually private mutations in these genes, and future research may focus on this area. |
format | Online Article Text |
id | pubmed-3154146 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-31541462011-08-11 Common polymorphisms in human lysyl oxidase genes are not associated with the adolescent idiopathic scoliosis phenotype McGregor, Tracy L Gurnett, Christina A Dobbs, Matthew B Wise, Carol A Morcuende, Jose A Morgan, Thomas M Menon, Ramkumar Muglia, Louis J BMC Med Genet Research Article BACKGROUND: Although adolescent idiopathic scoliosis affects approximately 3% of adolescents, the genetic contributions have proven difficult to identify. Work in model organisms, including zebrafish, chickens, and mice, has implicated the lysyl oxidase family of enzymes in the development of scoliosis. We hypothesized that common polymorphisms in the five human lysyl oxidase genes (LOX, LOXL1, LOXL2, LOXL3, and LOXL4) may be associated with the phenotype of adolescent idiopathic scoliosis. METHODS: This was a case-control genetic association study. A total of 112 coding and tag SNPs in LOX, LOXL1, LOXL2, LOXL3, and LOXL4 were genotyped in a discovery cohort of 138 cases and 411 controls. Genotypes were tested for association with adolescent idiopathic scoliosis by logistic regression with a two degree of freedom genotypic model and gender as a covariate. Fourteen SNPs with p < 0.1 in the discovery phase were genotyped in an independent replication cohort of 400 cases and 506 controls. RESULTS: No evidence for significant association was found between coding or tag SNPs in LOX, LOXL1, LOXL2, LOXL3, and LOXL4 and the phenotype of adolescent idiopathic scoliosis. CONCLUSIONS: Despite suggestive evidence in model organisms, common variants and known coding SNPs in the five human lysyl oxidase genes do not confer increased genotypic risk for adolescent idiopathic scoliosis. The above methodology does not address rare variants or individually private mutations in these genes, and future research may focus on this area. BioMed Central 2011-07-08 /pmc/articles/PMC3154146/ /pubmed/21740577 http://dx.doi.org/10.1186/1471-2350-12-92 Text en Copyright ©2011 McGregor et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article McGregor, Tracy L Gurnett, Christina A Dobbs, Matthew B Wise, Carol A Morcuende, Jose A Morgan, Thomas M Menon, Ramkumar Muglia, Louis J Common polymorphisms in human lysyl oxidase genes are not associated with the adolescent idiopathic scoliosis phenotype |
title | Common polymorphisms in human lysyl oxidase genes are not associated with the adolescent idiopathic scoliosis phenotype |
title_full | Common polymorphisms in human lysyl oxidase genes are not associated with the adolescent idiopathic scoliosis phenotype |
title_fullStr | Common polymorphisms in human lysyl oxidase genes are not associated with the adolescent idiopathic scoliosis phenotype |
title_full_unstemmed | Common polymorphisms in human lysyl oxidase genes are not associated with the adolescent idiopathic scoliosis phenotype |
title_short | Common polymorphisms in human lysyl oxidase genes are not associated with the adolescent idiopathic scoliosis phenotype |
title_sort | common polymorphisms in human lysyl oxidase genes are not associated with the adolescent idiopathic scoliosis phenotype |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3154146/ https://www.ncbi.nlm.nih.gov/pubmed/21740577 http://dx.doi.org/10.1186/1471-2350-12-92 |
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