Cargando…

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A(T))

Pyrolobus fumarii Blöchl et al. 1997 is the type species of the genus Pyrolobus, which belongs to the crenarchaeal family Pyrodictiaceae. The species is a facultatively microaerophilic non-motile crenarchaeon. It is of interest because of its isolated phylogenetic location in the tree of life and be...

Descripción completa

Detalles Bibliográficos
Autores principales: Anderson, Iain, Göker, Markus, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Huntemann, Marcel, Liolios, Konstantinos, Ivanova, Natalia, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Huber, Harald, Yasawong, Montri, Rohde, Manfred, Spring, Stefan, Abt, Birte, Sikorski, Johannes, Wirth, Reinhard, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, Lapidus, Alla
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156397/
https://www.ncbi.nlm.nih.gov/pubmed/21886865
http://dx.doi.org/10.4056/sigs.2014648
_version_ 1782210190561509376
author Anderson, Iain
Göker, Markus
Nolan, Matt
Lucas, Susan
Hammon, Nancy
Deshpande, Shweta
Cheng, Jan-Fang
Tapia, Roxanne
Han, Cliff
Goodwin, Lynne
Pitluck, Sam
Huntemann, Marcel
Liolios, Konstantinos
Ivanova, Natalia
Pagani, Ioanna
Mavromatis, Konstantinos
Ovchinikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Brambilla, Evelyne-Marie
Huber, Harald
Yasawong, Montri
Rohde, Manfred
Spring, Stefan
Abt, Birte
Sikorski, Johannes
Wirth, Reinhard
Detter, John C.
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lapidus, Alla
author_facet Anderson, Iain
Göker, Markus
Nolan, Matt
Lucas, Susan
Hammon, Nancy
Deshpande, Shweta
Cheng, Jan-Fang
Tapia, Roxanne
Han, Cliff
Goodwin, Lynne
Pitluck, Sam
Huntemann, Marcel
Liolios, Konstantinos
Ivanova, Natalia
Pagani, Ioanna
Mavromatis, Konstantinos
Ovchinikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Brambilla, Evelyne-Marie
Huber, Harald
Yasawong, Montri
Rohde, Manfred
Spring, Stefan
Abt, Birte
Sikorski, Johannes
Wirth, Reinhard
Detter, John C.
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lapidus, Alla
author_sort Anderson, Iain
collection PubMed
description Pyrolobus fumarii Blöchl et al. 1997 is the type species of the genus Pyrolobus, which belongs to the crenarchaeal family Pyrodictiaceae. The species is a facultatively microaerophilic non-motile crenarchaeon. It is of interest because of its isolated phylogenetic location in the tree of life and because it is a hyperthermophilic chemolithoautotroph known as the primary producer of organic matter at deep-sea hydrothermal vents. P. fumarii exhibits currently the highest optimal growth temperature of all life forms on earth (106°C). This is the first completed genome sequence of a member of the genus Pyrolobus to be published and only the second genome sequence from a member of the family Pyrodictiaceae. Although Diversa Corporation announced the completion of sequencing of the P. fumarii genome on September 25, 2001, this sequence was never released to the public. The 1,843,267 bp long genome with its 1,986 protein-coding and 52 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
format Online
Article
Text
id pubmed-3156397
institution National Center for Biotechnology Information
language English
publishDate 2011
publisher Michigan State University
record_format MEDLINE/PubMed
spelling pubmed-31563972011-08-31 Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A(T)) Anderson, Iain Göker, Markus Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Han, Cliff Goodwin, Lynne Pitluck, Sam Huntemann, Marcel Liolios, Konstantinos Ivanova, Natalia Pagani, Ioanna Mavromatis, Konstantinos Ovchinikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Brambilla, Evelyne-Marie Huber, Harald Yasawong, Montri Rohde, Manfred Spring, Stefan Abt, Birte Sikorski, Johannes Wirth, Reinhard Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla Stand Genomic Sci Short Genome Reports Pyrolobus fumarii Blöchl et al. 1997 is the type species of the genus Pyrolobus, which belongs to the crenarchaeal family Pyrodictiaceae. The species is a facultatively microaerophilic non-motile crenarchaeon. It is of interest because of its isolated phylogenetic location in the tree of life and because it is a hyperthermophilic chemolithoautotroph known as the primary producer of organic matter at deep-sea hydrothermal vents. P. fumarii exhibits currently the highest optimal growth temperature of all life forms on earth (106°C). This is the first completed genome sequence of a member of the genus Pyrolobus to be published and only the second genome sequence from a member of the family Pyrodictiaceae. Although Diversa Corporation announced the completion of sequencing of the P. fumarii genome on September 25, 2001, this sequence was never released to the public. The 1,843,267 bp long genome with its 1,986 protein-coding and 52 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2011-07-01 /pmc/articles/PMC3156397/ /pubmed/21886865 http://dx.doi.org/10.4056/sigs.2014648 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Anderson, Iain
Göker, Markus
Nolan, Matt
Lucas, Susan
Hammon, Nancy
Deshpande, Shweta
Cheng, Jan-Fang
Tapia, Roxanne
Han, Cliff
Goodwin, Lynne
Pitluck, Sam
Huntemann, Marcel
Liolios, Konstantinos
Ivanova, Natalia
Pagani, Ioanna
Mavromatis, Konstantinos
Ovchinikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Brambilla, Evelyne-Marie
Huber, Harald
Yasawong, Montri
Rohde, Manfred
Spring, Stefan
Abt, Birte
Sikorski, Johannes
Wirth, Reinhard
Detter, John C.
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Lapidus, Alla
Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A(T))
title Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A(T))
title_full Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A(T))
title_fullStr Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A(T))
title_full_unstemmed Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A(T))
title_short Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A(T))
title_sort complete genome sequence of the hyperthermophilic chemolithoautotroph pyrolobus fumarii type strain (1a(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156397/
https://www.ncbi.nlm.nih.gov/pubmed/21886865
http://dx.doi.org/10.4056/sigs.2014648
work_keys_str_mv AT andersoniain completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT gokermarkus completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT nolanmatt completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT lucassusan completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT hammonnancy completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT deshpandeshweta completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT chengjanfang completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT tapiaroxanne completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT hancliff completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT goodwinlynne completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT pitlucksam completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT huntemannmarcel completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT liolioskonstantinos completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT ivanovanatalia completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT paganiioanna completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT mavromatiskonstantinos completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT ovchinikovagalina completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT patiamrita completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT chenamy completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT palaniappankrishna completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT landmiriam completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT hauserloren completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT brambillaevelynemarie completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT huberharald completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT yasawongmontri completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT rohdemanfred completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT springstefan completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT abtbirte completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT sikorskijohannes completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT wirthreinhard completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT detterjohnc completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT woyketanja completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT bristowjames completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT eisenjonathana completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT markowitzvictor completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT hugenholtzphilip completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT kyrpidesnikosc completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT klenkhanspeter completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at
AT lapidusalla completegenomesequenceofthehyperthermophilicchemolithoautotrophpyrolobusfumariitypestrain1at