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Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL(T))
Halanaerobium praevalens Zeikus et al. 1984 is the type species of the genus Halanaerobium, which in turn is the type genus of the family Halanaerobiaceae. The species is of interest because it is able to reduce a variety of nitro-substituted aromatic compounds at a high rate, and because of its abi...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156398/ https://www.ncbi.nlm.nih.gov/pubmed/21886858 http://dx.doi.org/10.4056/sigs.1824509 |
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author | Ivanova, Natalia Sikorski, Johannes Chertkov, Olga Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Han, Cliff Goodwin, Lynne Pitluck, Sam Huntemann, Marcel Liolios, Konstantinos Pagani, Ioanna Mavromatis, Konstantinos Ovchinikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Brambilla, Evelyne-Marie Kannan, K. Palani Rohde, Manfred Tindall, Brian J. Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla |
author_facet | Ivanova, Natalia Sikorski, Johannes Chertkov, Olga Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Han, Cliff Goodwin, Lynne Pitluck, Sam Huntemann, Marcel Liolios, Konstantinos Pagani, Ioanna Mavromatis, Konstantinos Ovchinikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Brambilla, Evelyne-Marie Kannan, K. Palani Rohde, Manfred Tindall, Brian J. Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla |
author_sort | Ivanova, Natalia |
collection | PubMed |
description | Halanaerobium praevalens Zeikus et al. 1984 is the type species of the genus Halanaerobium, which in turn is the type genus of the family Halanaerobiaceae. The species is of interest because it is able to reduce a variety of nitro-substituted aromatic compounds at a high rate, and because of its ability to degrade organic pollutants. The strain is also of interest because it functions as a hydrolytic bacterium, fermenting complex organic matter and producing intermediary metabolites for other trophic groups such as sulfate-reducing and methanogenic bacteria. It is further reported as being involved in carbon removal in the Great Salt Lake, its source of isolation. This is the first completed genome sequence of a representative of the genus Halanaerobium and the second genome sequence from a type strain of the family Halanaerobiaceae. The 2,309,262 bp long genome with its 2,110 protein-coding and 70 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Online Article Text |
id | pubmed-3156398 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-31563982011-08-31 Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL(T)) Ivanova, Natalia Sikorski, Johannes Chertkov, Olga Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Han, Cliff Goodwin, Lynne Pitluck, Sam Huntemann, Marcel Liolios, Konstantinos Pagani, Ioanna Mavromatis, Konstantinos Ovchinikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Brambilla, Evelyne-Marie Kannan, K. Palani Rohde, Manfred Tindall, Brian J. Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla Stand Genomic Sci Short Genome Reports Halanaerobium praevalens Zeikus et al. 1984 is the type species of the genus Halanaerobium, which in turn is the type genus of the family Halanaerobiaceae. The species is of interest because it is able to reduce a variety of nitro-substituted aromatic compounds at a high rate, and because of its ability to degrade organic pollutants. The strain is also of interest because it functions as a hydrolytic bacterium, fermenting complex organic matter and producing intermediary metabolites for other trophic groups such as sulfate-reducing and methanogenic bacteria. It is further reported as being involved in carbon removal in the Great Salt Lake, its source of isolation. This is the first completed genome sequence of a representative of the genus Halanaerobium and the second genome sequence from a type strain of the family Halanaerobiaceae. The 2,309,262 bp long genome with its 2,110 protein-coding and 70 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2011-06-30 /pmc/articles/PMC3156398/ /pubmed/21886858 http://dx.doi.org/10.4056/sigs.1824509 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Ivanova, Natalia Sikorski, Johannes Chertkov, Olga Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Han, Cliff Goodwin, Lynne Pitluck, Sam Huntemann, Marcel Liolios, Konstantinos Pagani, Ioanna Mavromatis, Konstantinos Ovchinikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Brambilla, Evelyne-Marie Kannan, K. Palani Rohde, Manfred Tindall, Brian J. Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Lapidus, Alla Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL(T)) |
title | Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL(T)) |
title_full | Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL(T)) |
title_fullStr | Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL(T)) |
title_full_unstemmed | Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL(T)) |
title_short | Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL(T)) |
title_sort | complete genome sequence of the extremely halophilic halanaerobium praevalens type strain (gsl(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156398/ https://www.ncbi.nlm.nih.gov/pubmed/21886858 http://dx.doi.org/10.4056/sigs.1824509 |
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