PGAT: a multistrain analysis resource for microbial genomes

Motivation: The Prokaryotic-genome Analysis Tool (PGAT) is a web-based database application for comparing gene content and sequence across multiple microbial genomes facilitating the discovery of genetic differences that may explain observed phenotypes. PGAT supports database queries to identify gen...

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Detalles Bibliográficos
Autores principales: Brittnacher, M. J., Fong, C., Hayden, H. S., Jacobs, M. A., Radey, Matthew, Rohmer, L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3157930/
https://www.ncbi.nlm.nih.gov/pubmed/21765097
http://dx.doi.org/10.1093/bioinformatics/btr418
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author Brittnacher, M. J.
Fong, C.
Hayden, H. S.
Jacobs, M. A.
Radey, Matthew
Rohmer, L.
author_facet Brittnacher, M. J.
Fong, C.
Hayden, H. S.
Jacobs, M. A.
Radey, Matthew
Rohmer, L.
author_sort Brittnacher, M. J.
collection PubMed
description Motivation: The Prokaryotic-genome Analysis Tool (PGAT) is a web-based database application for comparing gene content and sequence across multiple microbial genomes facilitating the discovery of genetic differences that may explain observed phenotypes. PGAT supports database queries to identify genes that are present or absent in user-selected genomes, comparison of sequence polymorphisms in sets of orthologous genes, multigenome display of regions surrounding a query gene, comparison of the distribution of genes in metabolic pathways and manual community annotation. Availability and Implementation:The PGAT website may be accessed at http://nwrce.org/pgat. Contact: mbrittna@uw.edu
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spelling pubmed-31579302011-08-18 PGAT: a multistrain analysis resource for microbial genomes Brittnacher, M. J. Fong, C. Hayden, H. S. Jacobs, M. A. Radey, Matthew Rohmer, L. Bioinformatics Applications Note Motivation: The Prokaryotic-genome Analysis Tool (PGAT) is a web-based database application for comparing gene content and sequence across multiple microbial genomes facilitating the discovery of genetic differences that may explain observed phenotypes. PGAT supports database queries to identify genes that are present or absent in user-selected genomes, comparison of sequence polymorphisms in sets of orthologous genes, multigenome display of regions surrounding a query gene, comparison of the distribution of genes in metabolic pathways and manual community annotation. Availability and Implementation:The PGAT website may be accessed at http://nwrce.org/pgat. Contact: mbrittna@uw.edu Oxford University Press 2011-09-01 2011-07-15 /pmc/articles/PMC3157930/ /pubmed/21765097 http://dx.doi.org/10.1093/bioinformatics/btr418 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Brittnacher, M. J.
Fong, C.
Hayden, H. S.
Jacobs, M. A.
Radey, Matthew
Rohmer, L.
PGAT: a multistrain analysis resource for microbial genomes
title PGAT: a multistrain analysis resource for microbial genomes
title_full PGAT: a multistrain analysis resource for microbial genomes
title_fullStr PGAT: a multistrain analysis resource for microbial genomes
title_full_unstemmed PGAT: a multistrain analysis resource for microbial genomes
title_short PGAT: a multistrain analysis resource for microbial genomes
title_sort pgat: a multistrain analysis resource for microbial genomes
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3157930/
https://www.ncbi.nlm.nih.gov/pubmed/21765097
http://dx.doi.org/10.1093/bioinformatics/btr418
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