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Preliminary notes on dual relevance of ITS sequences and pigments in Hygrocybe taxonomy
The relationships based on ITS sequences of 48 Hygrocybe s.l. specimens were studied and compared with previously described taxonomic groups. Our specimens formed two well separated genetic groups. The first one includes the species characterized by vivid yellow and red colours, while species belong...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nationaal Herbarium Nederland & Centraallbureau voor Schimmelcultures
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3160800/ https://www.ncbi.nlm.nih.gov/pubmed/22025807 http://dx.doi.org/10.3767/003158511X578349 |
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author | Babos, M. Halász, K. Zagyva, T. Zöld-Balogh, Á. Szegő, D. Bratek, Z. |
author_facet | Babos, M. Halász, K. Zagyva, T. Zöld-Balogh, Á. Szegő, D. Bratek, Z. |
author_sort | Babos, M. |
collection | PubMed |
description | The relationships based on ITS sequences of 48 Hygrocybe s.l. specimens were studied and compared with previously described taxonomic groups. Our specimens formed two well separated genetic groups. The first one includes the species characterized by vivid yellow and red colours, while species belonging to other clades were pallid or pale brown, and in most cases with pink or olive tones. This separation is supported by the presence of muscaflavin pigments among some species referred to Hygrocybe (Bresinsky & Kronawitter 1986). The subgenera distinguished by morphological features can be relatively well recognized on phylogenetic trees, however, the majority of sections were not supported. Variability in the ITS region of Hygrocybe species is unusually high. In some cases sequences differed by more than 25 %, and the lengths of ITS regions also showed large differences. Taxa that were considered as closely related, e.g. the H. conica aggregate, were found to have identical or highly similar sequences. Our results seem to confirm the taxonomic concept of Bresinsky (2008) who proposed the division of the genus Hygrocybe. Hence H. calyptriformis and all examined members of subg. Gliophorus (H. irrigata, H. laeta, H. nitrata, H. psittacina) and subg. Cuphophyllus could be excluded from the genus Hygrocybe s.str. Based on these results further research using DNA markers at the intergeneric level is suggested to revaluate the taxonomy of former Hygrocybe species. |
format | Online Article Text |
id | pubmed-3160800 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Nationaal Herbarium Nederland & Centraallbureau voor Schimmelcultures |
record_format | MEDLINE/PubMed |
spelling | pubmed-31608002011-10-24 Preliminary notes on dual relevance of ITS sequences and pigments in Hygrocybe taxonomy Babos, M. Halász, K. Zagyva, T. Zöld-Balogh, Á. Szegő, D. Bratek, Z. Persoonia Research Article The relationships based on ITS sequences of 48 Hygrocybe s.l. specimens were studied and compared with previously described taxonomic groups. Our specimens formed two well separated genetic groups. The first one includes the species characterized by vivid yellow and red colours, while species belonging to other clades were pallid or pale brown, and in most cases with pink or olive tones. This separation is supported by the presence of muscaflavin pigments among some species referred to Hygrocybe (Bresinsky & Kronawitter 1986). The subgenera distinguished by morphological features can be relatively well recognized on phylogenetic trees, however, the majority of sections were not supported. Variability in the ITS region of Hygrocybe species is unusually high. In some cases sequences differed by more than 25 %, and the lengths of ITS regions also showed large differences. Taxa that were considered as closely related, e.g. the H. conica aggregate, were found to have identical or highly similar sequences. Our results seem to confirm the taxonomic concept of Bresinsky (2008) who proposed the division of the genus Hygrocybe. Hence H. calyptriformis and all examined members of subg. Gliophorus (H. irrigata, H. laeta, H. nitrata, H. psittacina) and subg. Cuphophyllus could be excluded from the genus Hygrocybe s.str. Based on these results further research using DNA markers at the intergeneric level is suggested to revaluate the taxonomy of former Hygrocybe species. Nationaal Herbarium Nederland & Centraallbureau voor Schimmelcultures 2011-05-11 2011-06 /pmc/articles/PMC3160800/ /pubmed/22025807 http://dx.doi.org/10.3767/003158511X578349 Text en © 2011 Nationaal Herbarium Nederland & Centraalbureau voor Schimmelcultures http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. (http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode) Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights. |
spellingShingle | Research Article Babos, M. Halász, K. Zagyva, T. Zöld-Balogh, Á. Szegő, D. Bratek, Z. Preliminary notes on dual relevance of ITS sequences and pigments in Hygrocybe taxonomy |
title | Preliminary notes on dual relevance of ITS sequences and pigments in Hygrocybe taxonomy |
title_full | Preliminary notes on dual relevance of ITS sequences and pigments in Hygrocybe taxonomy |
title_fullStr | Preliminary notes on dual relevance of ITS sequences and pigments in Hygrocybe taxonomy |
title_full_unstemmed | Preliminary notes on dual relevance of ITS sequences and pigments in Hygrocybe taxonomy |
title_short | Preliminary notes on dual relevance of ITS sequences and pigments in Hygrocybe taxonomy |
title_sort | preliminary notes on dual relevance of its sequences and pigments in hygrocybe taxonomy |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3160800/ https://www.ncbi.nlm.nih.gov/pubmed/22025807 http://dx.doi.org/10.3767/003158511X578349 |
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