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Are There Laws of Genome Evolution?

Research in quantitative evolutionary genomics and systems biology led to the discovery of several universal regularities connecting genomic and molecular phenomic variables. These universals include the log-normal distribution of the evolutionary rates of orthologous genes; the power law–like distr...

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Autor principal: Koonin, Eugene V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3161903/
https://www.ncbi.nlm.nih.gov/pubmed/21901087
http://dx.doi.org/10.1371/journal.pcbi.1002173
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author Koonin, Eugene V.
author_facet Koonin, Eugene V.
author_sort Koonin, Eugene V.
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description Research in quantitative evolutionary genomics and systems biology led to the discovery of several universal regularities connecting genomic and molecular phenomic variables. These universals include the log-normal distribution of the evolutionary rates of orthologous genes; the power law–like distributions of paralogous family size and node degree in various biological networks; the negative correlation between a gene's sequence evolution rate and expression level; and differential scaling of functional classes of genes with genome size. The universals of genome evolution can be accounted for by simple mathematical models similar to those used in statistical physics, such as the birth-death-innovation model. These models do not explicitly incorporate selection; therefore, the observed universal regularities do not appear to be shaped by selection but rather are emergent properties of gene ensembles. Although a complete physical theory of evolutionary biology is inconceivable, the universals of genome evolution might qualify as “laws of evolutionary genomics” in the same sense “law” is understood in modern physics.
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spelling pubmed-31619032011-09-07 Are There Laws of Genome Evolution? Koonin, Eugene V. PLoS Comput Biol Review Research in quantitative evolutionary genomics and systems biology led to the discovery of several universal regularities connecting genomic and molecular phenomic variables. These universals include the log-normal distribution of the evolutionary rates of orthologous genes; the power law–like distributions of paralogous family size and node degree in various biological networks; the negative correlation between a gene's sequence evolution rate and expression level; and differential scaling of functional classes of genes with genome size. The universals of genome evolution can be accounted for by simple mathematical models similar to those used in statistical physics, such as the birth-death-innovation model. These models do not explicitly incorporate selection; therefore, the observed universal regularities do not appear to be shaped by selection but rather are emergent properties of gene ensembles. Although a complete physical theory of evolutionary biology is inconceivable, the universals of genome evolution might qualify as “laws of evolutionary genomics” in the same sense “law” is understood in modern physics. Public Library of Science 2011-08-25 /pmc/articles/PMC3161903/ /pubmed/21901087 http://dx.doi.org/10.1371/journal.pcbi.1002173 Text en This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. https://creativecommons.org/publicdomain/zero/1.0/ This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.
spellingShingle Review
Koonin, Eugene V.
Are There Laws of Genome Evolution?
title Are There Laws of Genome Evolution?
title_full Are There Laws of Genome Evolution?
title_fullStr Are There Laws of Genome Evolution?
title_full_unstemmed Are There Laws of Genome Evolution?
title_short Are There Laws of Genome Evolution?
title_sort are there laws of genome evolution?
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3161903/
https://www.ncbi.nlm.nih.gov/pubmed/21901087
http://dx.doi.org/10.1371/journal.pcbi.1002173
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