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New comparative genomics approach reveals a conserved health span signature across species

Environmental and genetic interventions extend health span in a range of organisms by triggering changes in different specific but complementary pathways. We investigated the gene expression changes that occur across species when health span is extended via different interventions. To perform this c...

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Detalles Bibliográficos
Autores principales: Antosh, Michael, Fox, David, Helfand, Stephen L., Cooper, Leon N, Neretti, Nicola
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3164366/
https://www.ncbi.nlm.nih.gov/pubmed/21775776
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author Antosh, Michael
Fox, David
Helfand, Stephen L.
Cooper, Leon N
Neretti, Nicola
author_facet Antosh, Michael
Fox, David
Helfand, Stephen L.
Cooper, Leon N
Neretti, Nicola
author_sort Antosh, Michael
collection PubMed
description Environmental and genetic interventions extend health span in a range of organisms by triggering changes in different specific but complementary pathways. We investigated the gene expression changes that occur across species when health span is extended via different interventions. To perform this comparison using heterogeneous datasets from different measurement platforms and organisms, we developed a novel non-parametric methodology that can detect statistical significance of overlaps in ranked lists of genes, and estimate the number of genes with a common expression profile. By comparing genetic and environmental interventions that consistently lead to increased health span in invertebrates and vertebrates we built a conserved health span signature and described how such a signature depends on tissue type. Furthermore, we examined the relationship between calorie restriction and resveratrol administration and for the first time, identified common gene and pathway changes in calorie restriction and resveratrol in both invertebrates and mammals. Our approach can thus be used to explore and better define the relationships between highly complex biological phenomena, in this case those that affect the health and longevity.
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spelling pubmed-31643662011-09-02 New comparative genomics approach reveals a conserved health span signature across species Antosh, Michael Fox, David Helfand, Stephen L. Cooper, Leon N Neretti, Nicola Aging (Albany NY) Research Paper Environmental and genetic interventions extend health span in a range of organisms by triggering changes in different specific but complementary pathways. We investigated the gene expression changes that occur across species when health span is extended via different interventions. To perform this comparison using heterogeneous datasets from different measurement platforms and organisms, we developed a novel non-parametric methodology that can detect statistical significance of overlaps in ranked lists of genes, and estimate the number of genes with a common expression profile. By comparing genetic and environmental interventions that consistently lead to increased health span in invertebrates and vertebrates we built a conserved health span signature and described how such a signature depends on tissue type. Furthermore, we examined the relationship between calorie restriction and resveratrol administration and for the first time, identified common gene and pathway changes in calorie restriction and resveratrol in both invertebrates and mammals. Our approach can thus be used to explore and better define the relationships between highly complex biological phenomena, in this case those that affect the health and longevity. Impact Journals LLC 2011-06-29 /pmc/articles/PMC3164366/ /pubmed/21775776 Text en Copyright: © 2011 Antosh et al. http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
spellingShingle Research Paper
Antosh, Michael
Fox, David
Helfand, Stephen L.
Cooper, Leon N
Neretti, Nicola
New comparative genomics approach reveals a conserved health span signature across species
title New comparative genomics approach reveals a conserved health span signature across species
title_full New comparative genomics approach reveals a conserved health span signature across species
title_fullStr New comparative genomics approach reveals a conserved health span signature across species
title_full_unstemmed New comparative genomics approach reveals a conserved health span signature across species
title_short New comparative genomics approach reveals a conserved health span signature across species
title_sort new comparative genomics approach reveals a conserved health span signature across species
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3164366/
https://www.ncbi.nlm.nih.gov/pubmed/21775776
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