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New comparative genomics approach reveals a conserved health span signature across species
Environmental and genetic interventions extend health span in a range of organisms by triggering changes in different specific but complementary pathways. We investigated the gene expression changes that occur across species when health span is extended via different interventions. To perform this c...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3164366/ https://www.ncbi.nlm.nih.gov/pubmed/21775776 |
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author | Antosh, Michael Fox, David Helfand, Stephen L. Cooper, Leon N Neretti, Nicola |
author_facet | Antosh, Michael Fox, David Helfand, Stephen L. Cooper, Leon N Neretti, Nicola |
author_sort | Antosh, Michael |
collection | PubMed |
description | Environmental and genetic interventions extend health span in a range of organisms by triggering changes in different specific but complementary pathways. We investigated the gene expression changes that occur across species when health span is extended via different interventions. To perform this comparison using heterogeneous datasets from different measurement platforms and organisms, we developed a novel non-parametric methodology that can detect statistical significance of overlaps in ranked lists of genes, and estimate the number of genes with a common expression profile. By comparing genetic and environmental interventions that consistently lead to increased health span in invertebrates and vertebrates we built a conserved health span signature and described how such a signature depends on tissue type. Furthermore, we examined the relationship between calorie restriction and resveratrol administration and for the first time, identified common gene and pathway changes in calorie restriction and resveratrol in both invertebrates and mammals. Our approach can thus be used to explore and better define the relationships between highly complex biological phenomena, in this case those that affect the health and longevity. |
format | Online Article Text |
id | pubmed-3164366 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-31643662011-09-02 New comparative genomics approach reveals a conserved health span signature across species Antosh, Michael Fox, David Helfand, Stephen L. Cooper, Leon N Neretti, Nicola Aging (Albany NY) Research Paper Environmental and genetic interventions extend health span in a range of organisms by triggering changes in different specific but complementary pathways. We investigated the gene expression changes that occur across species when health span is extended via different interventions. To perform this comparison using heterogeneous datasets from different measurement platforms and organisms, we developed a novel non-parametric methodology that can detect statistical significance of overlaps in ranked lists of genes, and estimate the number of genes with a common expression profile. By comparing genetic and environmental interventions that consistently lead to increased health span in invertebrates and vertebrates we built a conserved health span signature and described how such a signature depends on tissue type. Furthermore, we examined the relationship between calorie restriction and resveratrol administration and for the first time, identified common gene and pathway changes in calorie restriction and resveratrol in both invertebrates and mammals. Our approach can thus be used to explore and better define the relationships between highly complex biological phenomena, in this case those that affect the health and longevity. Impact Journals LLC 2011-06-29 /pmc/articles/PMC3164366/ /pubmed/21775776 Text en Copyright: © 2011 Antosh et al. http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited |
spellingShingle | Research Paper Antosh, Michael Fox, David Helfand, Stephen L. Cooper, Leon N Neretti, Nicola New comparative genomics approach reveals a conserved health span signature across species |
title | New comparative genomics approach reveals a conserved health span signature across species |
title_full | New comparative genomics approach reveals a conserved health span signature across species |
title_fullStr | New comparative genomics approach reveals a conserved health span signature across species |
title_full_unstemmed | New comparative genomics approach reveals a conserved health span signature across species |
title_short | New comparative genomics approach reveals a conserved health span signature across species |
title_sort | new comparative genomics approach reveals a conserved health span signature across species |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3164366/ https://www.ncbi.nlm.nih.gov/pubmed/21775776 |
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