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Enabling multi-level relevance feedback on PubMed by integrating rank learning into DBMS

BACKGROUND: Finding relevant articles from PubMed is challenging because it is hard to express the user's specific intention in the given query interface, and a keyword query typically retrieves a large number of results. Researchers have applied machine learning techniques to find relevant art...

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Detalles Bibliográficos
Autores principales: Yu, Hwanjo, Kim, Taehoon, Oh, Jinoh, Ko, Ilhwan, Kim, Sungchul, Han, Wook-Shin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165966/
https://www.ncbi.nlm.nih.gov/pubmed/20406504
http://dx.doi.org/10.1186/1471-2105-11-S2-S6
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author Yu, Hwanjo
Kim, Taehoon
Oh, Jinoh
Ko, Ilhwan
Kim, Sungchul
Han, Wook-Shin
author_facet Yu, Hwanjo
Kim, Taehoon
Oh, Jinoh
Ko, Ilhwan
Kim, Sungchul
Han, Wook-Shin
author_sort Yu, Hwanjo
collection PubMed
description BACKGROUND: Finding relevant articles from PubMed is challenging because it is hard to express the user's specific intention in the given query interface, and a keyword query typically retrieves a large number of results. Researchers have applied machine learning techniques to find relevant articles by ranking the articles according to the learned relevance function. However, the process of learning and ranking is usually done offline without integrated with the keyword queries, and the users have to provide a large amount of training documents to get a reasonable learning accuracy. This paper proposes a novel multi-level relevance feedback system for PubMed, called RefMed, which supports both ad-hoc keyword queries and a multi-level relevance feedback in real time on PubMed. RESULTS: RefMed supports a multi-level relevance feedback by using the RankSVM as the learning method, and thus it achieves higher accuracy with less feedback. RefMed "tightly" integrates the RankSVM into RDBMS to support both keyword queries and the multi-level relevance feedback in real time; the tight coupling of the RankSVM and DBMS substantially improves the processing time. An efficient parameter selection method for the RankSVM is also proposed, which tunes the RankSVM parameter without performing validation. Thereby, RefMed achieves a high learning accuracy in real time without performing a validation process. RefMed is accessible at http://dm.postech.ac.kr/refmed. CONCLUSIONS: RefMed is the first multi-level relevance feedback system for PubMed, which achieves a high accuracy with less feedback. It effectively learns an accurate relevance function from the user’s feedback and efficiently processes the function to return relevant articles in real time.
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spelling pubmed-31659662011-09-03 Enabling multi-level relevance feedback on PubMed by integrating rank learning into DBMS Yu, Hwanjo Kim, Taehoon Oh, Jinoh Ko, Ilhwan Kim, Sungchul Han, Wook-Shin BMC Bioinformatics Proceedings BACKGROUND: Finding relevant articles from PubMed is challenging because it is hard to express the user's specific intention in the given query interface, and a keyword query typically retrieves a large number of results. Researchers have applied machine learning techniques to find relevant articles by ranking the articles according to the learned relevance function. However, the process of learning and ranking is usually done offline without integrated with the keyword queries, and the users have to provide a large amount of training documents to get a reasonable learning accuracy. This paper proposes a novel multi-level relevance feedback system for PubMed, called RefMed, which supports both ad-hoc keyword queries and a multi-level relevance feedback in real time on PubMed. RESULTS: RefMed supports a multi-level relevance feedback by using the RankSVM as the learning method, and thus it achieves higher accuracy with less feedback. RefMed "tightly" integrates the RankSVM into RDBMS to support both keyword queries and the multi-level relevance feedback in real time; the tight coupling of the RankSVM and DBMS substantially improves the processing time. An efficient parameter selection method for the RankSVM is also proposed, which tunes the RankSVM parameter without performing validation. Thereby, RefMed achieves a high learning accuracy in real time without performing a validation process. RefMed is accessible at http://dm.postech.ac.kr/refmed. CONCLUSIONS: RefMed is the first multi-level relevance feedback system for PubMed, which achieves a high accuracy with less feedback. It effectively learns an accurate relevance function from the user’s feedback and efficiently processes the function to return relevant articles in real time. BioMed Central 2010-04-16 /pmc/articles/PMC3165966/ /pubmed/20406504 http://dx.doi.org/10.1186/1471-2105-11-S2-S6 Text en Copyright ©2010 Han et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Proceedings
Yu, Hwanjo
Kim, Taehoon
Oh, Jinoh
Ko, Ilhwan
Kim, Sungchul
Han, Wook-Shin
Enabling multi-level relevance feedback on PubMed by integrating rank learning into DBMS
title Enabling multi-level relevance feedback on PubMed by integrating rank learning into DBMS
title_full Enabling multi-level relevance feedback on PubMed by integrating rank learning into DBMS
title_fullStr Enabling multi-level relevance feedback on PubMed by integrating rank learning into DBMS
title_full_unstemmed Enabling multi-level relevance feedback on PubMed by integrating rank learning into DBMS
title_short Enabling multi-level relevance feedback on PubMed by integrating rank learning into DBMS
title_sort enabling multi-level relevance feedback on pubmed by integrating rank learning into dbms
topic Proceedings
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165966/
https://www.ncbi.nlm.nih.gov/pubmed/20406504
http://dx.doi.org/10.1186/1471-2105-11-S2-S6
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