DOPA: GPU-based protein alignment using database and memory access optimizations

BACKGROUND: Smith-Waterman (S-W) algorithm is an optimal sequence alignment method for biological databases, but its computational complexity makes it too slow for practical purposes. Heuristics based approximate methods like FASTA and BLAST provide faster solutions but at the cost of reduced accura...

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Detalles Bibliográficos
Autores principales: Hasan, Laiq, Kentie, Marijn, Al-Ars, Zaid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Technical Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166271/
https://www.ncbi.nlm.nih.gov/pubmed/21798061
http://dx.doi.org/10.1186/1756-0500-4-261

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166271/
https://www.ncbi.nlm.nih.gov/pubmed/21798061
http://dx.doi.org/10.1186/1756-0500-4-261

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