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DOPA: GPU-based protein alignment using database and memory access optimizations
BACKGROUND: Smith-Waterman (S-W) algorithm is an optimal sequence alignment method for biological databases, but its computational complexity makes it too slow for practical purposes. Heuristics based approximate methods like FASTA and BLAST provide faster solutions but at the cost of reduced accura...
| Autores principales: | , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2011
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166271/ https://www.ncbi.nlm.nih.gov/pubmed/21798061 http://dx.doi.org/10.1186/1756-0500-4-261 |