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BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
The crystal structure of a β-lactamase-like protein from Brucella melitensis was initially solved by SAD phasing from an in-house data set collected on a crystal soaked with iodide. A high-resolution data set was collected at a synchroton at the Se edge wavelength, which also provided an independent...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3169410/ https://www.ncbi.nlm.nih.gov/pubmed/21904058 http://dx.doi.org/10.1107/S1744309111010220 |
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author | Abendroth, Jan Sankaran, Banumathi Edwards, Thomas E. Gardberg, Anna S. Dieterich, Shellie Bhandari, Janhavi Napuli, Alberto J. Van Voorhis, Wesley C. Staker, Bart L. Myler, Peter J. Stewart, Lance J. |
author_facet | Abendroth, Jan Sankaran, Banumathi Edwards, Thomas E. Gardberg, Anna S. Dieterich, Shellie Bhandari, Janhavi Napuli, Alberto J. Van Voorhis, Wesley C. Staker, Bart L. Myler, Peter J. Stewart, Lance J. |
author_sort | Abendroth, Jan |
collection | PubMed |
description | The crystal structure of a β-lactamase-like protein from Brucella melitensis was initially solved by SAD phasing from an in-house data set collected on a crystal soaked with iodide. A high-resolution data set was collected at a synchroton at the Se edge wavelength, which also provided an independent source of phasing using a small anomalous signal from metal ions in the active site. Comparisons of anomalous peak heights at various wavelengths allowed the identification of the active-site metal ions as manganese. In the native data set a partially occupied GMP could be identified. When co-crystallized with AMPPNP or GMPPNP, clear density for the hydrolyzed analogs was observed, providing hints to the function of the protein. |
format | Online Article Text |
id | pubmed-3169410 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-31694102011-09-21 BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis Abendroth, Jan Sankaran, Banumathi Edwards, Thomas E. Gardberg, Anna S. Dieterich, Shellie Bhandari, Janhavi Napuli, Alberto J. Van Voorhis, Wesley C. Staker, Bart L. Myler, Peter J. Stewart, Lance J. Acta Crystallogr Sect F Struct Biol Cryst Commun Structural Communications The crystal structure of a β-lactamase-like protein from Brucella melitensis was initially solved by SAD phasing from an in-house data set collected on a crystal soaked with iodide. A high-resolution data set was collected at a synchroton at the Se edge wavelength, which also provided an independent source of phasing using a small anomalous signal from metal ions in the active site. Comparisons of anomalous peak heights at various wavelengths allowed the identification of the active-site metal ions as manganese. In the native data set a partially occupied GMP could be identified. When co-crystallized with AMPPNP or GMPPNP, clear density for the hydrolyzed analogs was observed, providing hints to the function of the protein. International Union of Crystallography 2011-08-16 /pmc/articles/PMC3169410/ /pubmed/21904058 http://dx.doi.org/10.1107/S1744309111010220 Text en © Abendroth et al. 2011 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Structural Communications Abendroth, Jan Sankaran, Banumathi Edwards, Thomas E. Gardberg, Anna S. Dieterich, Shellie Bhandari, Janhavi Napuli, Alberto J. Van Voorhis, Wesley C. Staker, Bart L. Myler, Peter J. Stewart, Lance J. BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis |
title | BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
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title_full | BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
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title_fullStr | BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
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title_full_unstemmed | BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
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title_short | BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
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title_sort | braba.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from brucella melitensis |
topic | Structural Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3169410/ https://www.ncbi.nlm.nih.gov/pubmed/21904058 http://dx.doi.org/10.1107/S1744309111010220 |
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