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BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis

The crystal structure of a β-lactamase-like protein from Brucella melitensis was initially solved by SAD phasing from an in-house data set collected on a crystal soaked with iodide. A high-resolution data set was collected at a synchroton at the Se edge wavelength, which also provided an independent...

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Autores principales: Abendroth, Jan, Sankaran, Banumathi, Edwards, Thomas E., Gardberg, Anna S., Dieterich, Shellie, Bhandari, Janhavi, Napuli, Alberto J., Van Voorhis, Wesley C., Staker, Bart L., Myler, Peter J., Stewart, Lance J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3169410/
https://www.ncbi.nlm.nih.gov/pubmed/21904058
http://dx.doi.org/10.1107/S1744309111010220
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author Abendroth, Jan
Sankaran, Banumathi
Edwards, Thomas E.
Gardberg, Anna S.
Dieterich, Shellie
Bhandari, Janhavi
Napuli, Alberto J.
Van Voorhis, Wesley C.
Staker, Bart L.
Myler, Peter J.
Stewart, Lance J.
author_facet Abendroth, Jan
Sankaran, Banumathi
Edwards, Thomas E.
Gardberg, Anna S.
Dieterich, Shellie
Bhandari, Janhavi
Napuli, Alberto J.
Van Voorhis, Wesley C.
Staker, Bart L.
Myler, Peter J.
Stewart, Lance J.
author_sort Abendroth, Jan
collection PubMed
description The crystal structure of a β-lactamase-like protein from Brucella melitensis was initially solved by SAD phasing from an in-house data set collected on a crystal soaked with iodide. A high-resolution data set was collected at a synchroton at the Se edge wavelength, which also provided an independent source of phasing using a small anomalous signal from metal ions in the active site. Comparisons of anomalous peak heights at various wavelengths allowed the identification of the active-site metal ions as manganese. In the native data set a partially occupied GMP could be identified. When co-crystallized with AMPPNP or GMPPNP, clear density for the hydrolyzed analogs was observed, providing hints to the function of the protein.
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spelling pubmed-31694102011-09-21 BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis Abendroth, Jan Sankaran, Banumathi Edwards, Thomas E. Gardberg, Anna S. Dieterich, Shellie Bhandari, Janhavi Napuli, Alberto J. Van Voorhis, Wesley C. Staker, Bart L. Myler, Peter J. Stewart, Lance J. Acta Crystallogr Sect F Struct Biol Cryst Commun Structural Communications The crystal structure of a β-lactamase-like protein from Brucella melitensis was initially solved by SAD phasing from an in-house data set collected on a crystal soaked with iodide. A high-resolution data set was collected at a synchroton at the Se edge wavelength, which also provided an independent source of phasing using a small anomalous signal from metal ions in the active site. Comparisons of anomalous peak heights at various wavelengths allowed the identification of the active-site metal ions as manganese. In the native data set a partially occupied GMP could be identified. When co-crystallized with AMPPNP or GMPPNP, clear density for the hydrolyzed analogs was observed, providing hints to the function of the protein. International Union of Crystallography 2011-08-16 /pmc/articles/PMC3169410/ /pubmed/21904058 http://dx.doi.org/10.1107/S1744309111010220 Text en © Abendroth et al. 2011 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Structural Communications
Abendroth, Jan
Sankaran, Banumathi
Edwards, Thomas E.
Gardberg, Anna S.
Dieterich, Shellie
Bhandari, Janhavi
Napuli, Alberto J.
Van Voorhis, Wesley C.
Staker, Bart L.
Myler, Peter J.
Stewart, Lance J.
BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
title BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
title_full BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
title_fullStr BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
title_full_unstemmed BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
title_short BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from Brucella melitensis
title_sort braba.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a ‘putative β-lactamase-like protein’ from brucella melitensis
topic Structural Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3169410/
https://www.ncbi.nlm.nih.gov/pubmed/21904058
http://dx.doi.org/10.1107/S1744309111010220
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