An online conserved SSR discovery through cross-species comparison

Simple sequence repeats (SSRs) play important roles in gene regulation and genome evolution. Although there exist several online resources for SSR mining, most of them only extract general SSR patterns without providing functional information. Here, an online search tool, CG-SSR (Comparative Genomic...

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Autores principales: Pai, Tun-Wen, Chen, Chien-Ming, Hsiao, Meng-Chang, Cheng, Ronshan, Tzou, Wen-Shyong, Hu, Chin-Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove Medical Press 2009
Materias:
Original Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3169944/
https://www.ncbi.nlm.nih.gov/pubmed/21918613
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author Pai, Tun-Wen
Chen, Chien-Ming
Hsiao, Meng-Chang
Cheng, Ronshan
Tzou, Wen-Shyong
Hu, Chin-Hua
author_facet Pai, Tun-Wen
Chen, Chien-Ming
Hsiao, Meng-Chang
Cheng, Ronshan
Tzou, Wen-Shyong
Hu, Chin-Hua
author_sort Pai, Tun-Wen
collection PubMed
description Simple sequence repeats (SSRs) play important roles in gene regulation and genome evolution. Although there exist several online resources for SSR mining, most of them only extract general SSR patterns without providing functional information. Here, an online search tool, CG-SSR (Comparative Genomics SSR discovery), has been developed for discovering potential functional SSRs from vertebrate genomes through cross-species comparison. In addition to revealing SSR candidates in conserved regions among various species, it also combines accurate coordinate and functional genomics information. CG-SSR is the first comprehensive and efficient online tool for conserved SSR discovery.
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spelling pubmed-31699442011-09-14 An online conserved SSR discovery through cross-species comparison Pai, Tun-Wen Chen, Chien-Ming Hsiao, Meng-Chang Cheng, Ronshan Tzou, Wen-Shyong Hu, Chin-Hua Adv Appl Bioinforma Chem Original Research Simple sequence repeats (SSRs) play important roles in gene regulation and genome evolution. Although there exist several online resources for SSR mining, most of them only extract general SSR patterns without providing functional information. Here, an online search tool, CG-SSR (Comparative Genomics SSR discovery), has been developed for discovering potential functional SSRs from vertebrate genomes through cross-species comparison. In addition to revealing SSR candidates in conserved regions among various species, it also combines accurate coordinate and functional genomics information. CG-SSR is the first comprehensive and efficient online tool for conserved SSR discovery. Dove Medical Press 2009-02-08 /pmc/articles/PMC3169944/ /pubmed/21918613 Text en © 2009 Pai et al, publisher and licensee Dove Medical Press Ltd. This is an Open Access article which permits unrestricted noncommercial use, provided the original work is properly cited.
spellingShingle Original Research
Pai, Tun-Wen
Chen, Chien-Ming
Hsiao, Meng-Chang
Cheng, Ronshan
Tzou, Wen-Shyong
Hu, Chin-Hua
An online conserved SSR discovery through cross-species comparison
title An online conserved SSR discovery through cross-species comparison
title_full An online conserved SSR discovery through cross-species comparison
title_fullStr An online conserved SSR discovery through cross-species comparison
title_full_unstemmed An online conserved SSR discovery through cross-species comparison
title_short An online conserved SSR discovery through cross-species comparison
title_sort online conserved ssr discovery through cross-species comparison
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3169944/
https://www.ncbi.nlm.nih.gov/pubmed/21918613
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