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A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks

The cell division cycle comprises a sequence of phenomena controlled by a stable and robust genetic network. We applied a probabilistic genetic network (PGN) to construct a hypothetical model with a dynamical behavior displaying the degree of robustness typical of the biological cell cycle. The stru...

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Detalles Bibliográficos
Autores principales: Trepode, Nestor Walter, Armelin, Hugo Aguirre, Bittner, Michael, Barrera, Junior, Gubitoso, Marco Dimas, Hashimoto, Ronaldo Fumio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171351/
https://www.ncbi.nlm.nih.gov/pubmed/18256726
http://dx.doi.org/10.1155/2007/73109
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author Trepode, Nestor Walter
Armelin, Hugo Aguirre
Bittner, Michael
Barrera, Junior
Gubitoso, Marco Dimas
Hashimoto, Ronaldo Fumio
author_facet Trepode, Nestor Walter
Armelin, Hugo Aguirre
Bittner, Michael
Barrera, Junior
Gubitoso, Marco Dimas
Hashimoto, Ronaldo Fumio
author_sort Trepode, Nestor Walter
collection PubMed
description The cell division cycle comprises a sequence of phenomena controlled by a stable and robust genetic network. We applied a probabilistic genetic network (PGN) to construct a hypothetical model with a dynamical behavior displaying the degree of robustness typical of the biological cell cycle. The structure of our PGN model was inspired in well-established biological facts such as the existence of integrator subsystems, negative and positive feedback loops, and redundant signaling pathways. Our model represents genes interactions as stochastic processes and presents strong robustness in the presence of moderate noise and parameters fluctuations. A recently published deterministic yeast cell-cycle model does not perform as well as our PGN model, even upon moderate noise conditions. In addition, self stimulatory mechanisms can give our PGN model the possibility of having a pacemaker activity similar to the observed in the oscillatory embryonic cell cycle.
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spelling pubmed-31713512011-09-13 A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks Trepode, Nestor Walter Armelin, Hugo Aguirre Bittner, Michael Barrera, Junior Gubitoso, Marco Dimas Hashimoto, Ronaldo Fumio EURASIP J Bioinform Syst Biol Research Article The cell division cycle comprises a sequence of phenomena controlled by a stable and robust genetic network. We applied a probabilistic genetic network (PGN) to construct a hypothetical model with a dynamical behavior displaying the degree of robustness typical of the biological cell cycle. The structure of our PGN model was inspired in well-established biological facts such as the existence of integrator subsystems, negative and positive feedback loops, and redundant signaling pathways. Our model represents genes interactions as stochastic processes and presents strong robustness in the presence of moderate noise and parameters fluctuations. A recently published deterministic yeast cell-cycle model does not perform as well as our PGN model, even upon moderate noise conditions. In addition, self stimulatory mechanisms can give our PGN model the possibility of having a pacemaker activity similar to the observed in the oscillatory embryonic cell cycle. Springer 2007-05-17 /pmc/articles/PMC3171351/ /pubmed/18256726 http://dx.doi.org/10.1155/2007/73109 Text en Copyright © 2007 Nestor Walter Trepode et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Trepode, Nestor Walter
Armelin, Hugo Aguirre
Bittner, Michael
Barrera, Junior
Gubitoso, Marco Dimas
Hashimoto, Ronaldo Fumio
A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks
title A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks
title_full A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks
title_fullStr A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks
title_full_unstemmed A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks
title_short A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks
title_sort robust structural pgn model for control of cell-cycle progression stabilized by negative feedbacks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171351/
https://www.ncbi.nlm.nih.gov/pubmed/18256726
http://dx.doi.org/10.1155/2007/73109
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