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A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks
The cell division cycle comprises a sequence of phenomena controlled by a stable and robust genetic network. We applied a probabilistic genetic network (PGN) to construct a hypothetical model with a dynamical behavior displaying the degree of robustness typical of the biological cell cycle. The stru...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171351/ https://www.ncbi.nlm.nih.gov/pubmed/18256726 http://dx.doi.org/10.1155/2007/73109 |
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author | Trepode, Nestor Walter Armelin, Hugo Aguirre Bittner, Michael Barrera, Junior Gubitoso, Marco Dimas Hashimoto, Ronaldo Fumio |
author_facet | Trepode, Nestor Walter Armelin, Hugo Aguirre Bittner, Michael Barrera, Junior Gubitoso, Marco Dimas Hashimoto, Ronaldo Fumio |
author_sort | Trepode, Nestor Walter |
collection | PubMed |
description | The cell division cycle comprises a sequence of phenomena controlled by a stable and robust genetic network. We applied a probabilistic genetic network (PGN) to construct a hypothetical model with a dynamical behavior displaying the degree of robustness typical of the biological cell cycle. The structure of our PGN model was inspired in well-established biological facts such as the existence of integrator subsystems, negative and positive feedback loops, and redundant signaling pathways. Our model represents genes interactions as stochastic processes and presents strong robustness in the presence of moderate noise and parameters fluctuations. A recently published deterministic yeast cell-cycle model does not perform as well as our PGN model, even upon moderate noise conditions. In addition, self stimulatory mechanisms can give our PGN model the possibility of having a pacemaker activity similar to the observed in the oscillatory embryonic cell cycle. |
format | Online Article Text |
id | pubmed-3171351 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | Springer |
record_format | MEDLINE/PubMed |
spelling | pubmed-31713512011-09-13 A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks Trepode, Nestor Walter Armelin, Hugo Aguirre Bittner, Michael Barrera, Junior Gubitoso, Marco Dimas Hashimoto, Ronaldo Fumio EURASIP J Bioinform Syst Biol Research Article The cell division cycle comprises a sequence of phenomena controlled by a stable and robust genetic network. We applied a probabilistic genetic network (PGN) to construct a hypothetical model with a dynamical behavior displaying the degree of robustness typical of the biological cell cycle. The structure of our PGN model was inspired in well-established biological facts such as the existence of integrator subsystems, negative and positive feedback loops, and redundant signaling pathways. Our model represents genes interactions as stochastic processes and presents strong robustness in the presence of moderate noise and parameters fluctuations. A recently published deterministic yeast cell-cycle model does not perform as well as our PGN model, even upon moderate noise conditions. In addition, self stimulatory mechanisms can give our PGN model the possibility of having a pacemaker activity similar to the observed in the oscillatory embryonic cell cycle. Springer 2007-05-17 /pmc/articles/PMC3171351/ /pubmed/18256726 http://dx.doi.org/10.1155/2007/73109 Text en Copyright © 2007 Nestor Walter Trepode et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Trepode, Nestor Walter Armelin, Hugo Aguirre Bittner, Michael Barrera, Junior Gubitoso, Marco Dimas Hashimoto, Ronaldo Fumio A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks |
title | A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks |
title_full | A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks |
title_fullStr | A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks |
title_full_unstemmed | A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks |
title_short | A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks |
title_sort | robust structural pgn model for control of cell-cycle progression stabilized by negative feedbacks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171351/ https://www.ncbi.nlm.nih.gov/pubmed/18256726 http://dx.doi.org/10.1155/2007/73109 |
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