Cargando…

Inference of Boolean Networks Using Sensitivity Regularization

The inference of genetic regulatory networks from global measurements of gene expressions is an important problem in computational biology. Recent studies suggest that such dynamical molecular systems are poised at a critical phase transition between an ordered and a disordered phase, affording the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Wenbin, LÃ¤hdesmÃ¤ki, Harri, Dougherty, Edward R, Shmulevich, Ilya
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Springer 2008
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171400/ https://www.ncbi.nlm.nih.gov/pubmed/18604289 http://dx.doi.org/10.1155/2008/780541

Ejemplares similares

Steady-State Analysis of Genetic Regulatory Networks Modelled by Probabilistic Boolean Networks
por: Shmulevich, Ilya, et al.
Publicado: (2003)

Probabilistic boolean networks predict transcription factor targets to induce transdifferentiation
por: Tercan, Bahar, et al.
Publicado: (2022)

Intervention in Context-Sensitive Probabilistic Boolean Networks Revisited
por: Faryabi, Babak, et al.
Publicado: (2009)

Inference of a Probabilistic Boolean Network from a Single Observed Temporal Sequence
por: Marshall, Stephen, et al.
Publicado: (2007)

Learning restricted Boolean network model by time-series data
por: Ouyang, Hongjia, et al.
Publicado: (2014)

Flexibility of Boolean Network Reservoir Computers in Approximating Arbitrary Recursive and Non-Recursive Binary Filters
por: Echlin, Moriah, et al.
Publicado: (2018)

Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources
por: Lähdesmäki, Harri, et al.
Publicado: (2008)

Inferring Boolean network states from partial information
por: Karlebach, Guy
Publicado: (2013)

A Full Bayesian Approach for Boolean Genetic Network Inference
por: Han, Shengtong, et al.
Publicado: (2014)

Evolving Sensitivity Balances Boolean Networks
por: Luo, Jamie X., et al.
Publicado: (2012)

Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
por: Li, Peng, et al.
Publicado: (2007)

Inference of a Boolean Network From Causal Logic Implications
por: Maheshwari, Parul, et al.
Publicado: (2022)

Review and assessment of Boolean approaches for inference of gene regulatory networks
por: Pušnik, Žiga, et al.
Publicado: (2022)

An Evaluation of Methods for Inferring Boolean Networks from Time-Series Data
por: Berestovsky, Natalie, et al.
Publicado: (2013)

Griffin: A Tool for Symbolic Inference of Synchronous Boolean Molecular Networks
por: Muñoz, Stalin, et al.
Publicado: (2018)

Boolean network sketches: a unifying framework for logical model inference
por: Beneš, Nikola, et al.
Publicado: (2023)

Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
por: Kim, Haseong, et al.
Publicado: (2007)

On the Limitations of Biological Knowledge
por: Dougherty, Edward R, et al.
Publicado: (2012)

Genomic signal processing
por: Shmulevich, Ilya, et al.
Publicado: (2007)

LogBTF: gene regulatory network inference using Boolean threshold network model from single-cell gene expression data
por: Li, Lingyu, et al.
Publicado: (2023)

Analysis and Practical Guideline of Constraint-Based Boolean Method in Genetic Network Inference
por: Saithong, Treenut, et al.
Publicado: (2012)

Boolean Models of Genomic Regulatory Networks: Reduction Mappings, Inference, and External Control
por: Ivanov, Ivan
Publicado: (2009)

A novel Boolean network inference strategy to model early hematopoiesis aging
por: Hérault, Léonard, et al.
Publicado: (2022)

Inference of Biological Pathway from Gene Expression Profiles by Time Delay Boolean Networks
por: Chueh, Tung-Hung, et al.
Publicado: (2012)

Boolean network inference from time series data incorporating prior biological knowledge
por: Haider, Saad, et al.
Publicado: (2012)

An information theoretic approach for the inference of Boolean networks and functions from data: BoCSE
por: Murrugarra, David, et al.
Publicado: (2022)

Gene perturbation and intervention in context-sensitive stochastic Boolean networks
por: Zhu, Peican, et al.
Publicado: (2014)

Method for identification of sensitive nodes in Boolean models of biological networks
por: Dnyane, Pooja A., et al.
Publicado: (2018)

Validation of Inference Procedures for Gene Regulatory Networks
por: Dougherty, Edward R
Publicado: (2007)

Algorithms for Finding Small Attractors in Boolean Networks
por: Zhang, Shu-Qin, et al.
Publicado: (2007)

Boolean Networks as Modeling Framework
por: Greil, Florian
Publicado: (2012)

The Power of Boolean Implication Networks
por: Sahoo, Debashis
Publicado: (2012)

Networking development by Boolean logic
por: Tu, Shikui, et al.
Publicado: (2013)

Computing preimages of Boolean networks
por: Klotz, Johannes Georg, et al.
Publicado: (2013)

Influence maximization in Boolean networks
por: Parmer, Thomas, et al.
Publicado: (2022)

The Dynamics of Canalizing Boolean Networks
por: Paul, Elijah, et al.
Publicado: (2020)

Automated inference of Boolean models from molecular interaction maps using CaSQ
por: Aghamiri, Sara Sadat, et al.
Publicado: (2020)

Validation of gene regulatory network inference based on controllability
por: Qian, Xiaoning, et al.
Publicado: (2013)

Sensitivity analysis of biological Boolean networks using information fusion based on nonadditive set functions
por: Kochi, Naomi, et al.
Publicado: (2014)

State feedback control design for Boolean networks
por: Liu, Rongjie, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_tr52bskl5k40mdcbiet3vus8sn