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Adaptive Dynamics of Regulatory Networks: Size Matters
To accomplish adaptability, all living organisms are constructed of regulatory networks on different levels which are capable to differentially respond to a variety of environmental inputs. Structure of regulatory networks determines their phenotypical plasticity, that is, the degree of detail and a...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171436/ https://www.ncbi.nlm.nih.gov/pubmed/19333363 http://dx.doi.org/10.1186/1687-4153-2009-618502 |
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author | Repsilber, Dirk Martinetz, Thomas Björklund, Mats |
author_facet | Repsilber, Dirk Martinetz, Thomas Björklund, Mats |
author_sort | Repsilber, Dirk |
collection | PubMed |
description | To accomplish adaptability, all living organisms are constructed of regulatory networks on different levels which are capable to differentially respond to a variety of environmental inputs. Structure of regulatory networks determines their phenotypical plasticity, that is, the degree of detail and appropriateness of regulatory replies to environmental or developmental challenges. This regulatory network structure is encoded within the genotype. Our conceptual simulation study investigates how network structure constrains the evolution of networks and their adaptive abilities. The focus is on the structural parameter network size. We show that small regulatory networks adapt fast, but not as good as larger networks in the longer perspective. Selection leads to an optimal network size dependent on heterogeneity of the environment and time pressure of adaptation. Optimal mutation rates are higher for smaller networks. We put special emphasis on discussing our simulation results on the background of functional observations from experimental and evolutionary biology. |
format | Online Article Text |
id | pubmed-3171436 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Springer |
record_format | MEDLINE/PubMed |
spelling | pubmed-31714362011-09-13 Adaptive Dynamics of Regulatory Networks: Size Matters Repsilber, Dirk Martinetz, Thomas Björklund, Mats EURASIP J Bioinform Syst Biol Research Article To accomplish adaptability, all living organisms are constructed of regulatory networks on different levels which are capable to differentially respond to a variety of environmental inputs. Structure of regulatory networks determines their phenotypical plasticity, that is, the degree of detail and appropriateness of regulatory replies to environmental or developmental challenges. This regulatory network structure is encoded within the genotype. Our conceptual simulation study investigates how network structure constrains the evolution of networks and their adaptive abilities. The focus is on the structural parameter network size. We show that small regulatory networks adapt fast, but not as good as larger networks in the longer perspective. Selection leads to an optimal network size dependent on heterogeneity of the environment and time pressure of adaptation. Optimal mutation rates are higher for smaller networks. We put special emphasis on discussing our simulation results on the background of functional observations from experimental and evolutionary biology. Springer 2009-02-03 /pmc/articles/PMC3171436/ /pubmed/19333363 http://dx.doi.org/10.1186/1687-4153-2009-618502 Text en Copyright © 2009 Copyright © 2009 https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Repsilber, Dirk Martinetz, Thomas Björklund, Mats Adaptive Dynamics of Regulatory Networks: Size Matters |
title | Adaptive Dynamics of Regulatory Networks: Size Matters |
title_full | Adaptive Dynamics of Regulatory Networks: Size Matters |
title_fullStr | Adaptive Dynamics of Regulatory Networks: Size Matters |
title_full_unstemmed | Adaptive Dynamics of Regulatory Networks: Size Matters |
title_short | Adaptive Dynamics of Regulatory Networks: Size Matters |
title_sort | adaptive dynamics of regulatory networks: size matters |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171436/ https://www.ncbi.nlm.nih.gov/pubmed/19333363 http://dx.doi.org/10.1186/1687-4153-2009-618502 |
work_keys_str_mv | AT repsilberdirk adaptivedynamicsofregulatorynetworkssizematters AT martinetzthomas adaptivedynamicsofregulatorynetworkssizematters AT bjorklundmats adaptivedynamicsofregulatorynetworkssizematters |