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Stochastic Switching Induced Adaptation in a Starved Escherichia coli Population

Population adaptation can be determined by stochastic switching in living cells. To examine how stochastic switching contributes to the fate decision for a population under severe stress, we constructed an Escherichia coli strain crucially dependent on the expression of a rewired gene. The gene esse...

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Autores principales: Shimizu, Yoshihiro, Tsuru, Saburo, Ito, Yoichiro, Ying, Bei-Wen, Yomo, Tetsuya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3172215/
https://www.ncbi.nlm.nih.gov/pubmed/21931628
http://dx.doi.org/10.1371/journal.pone.0023953
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author Shimizu, Yoshihiro
Tsuru, Saburo
Ito, Yoichiro
Ying, Bei-Wen
Yomo, Tetsuya
author_facet Shimizu, Yoshihiro
Tsuru, Saburo
Ito, Yoichiro
Ying, Bei-Wen
Yomo, Tetsuya
author_sort Shimizu, Yoshihiro
collection PubMed
description Population adaptation can be determined by stochastic switching in living cells. To examine how stochastic switching contributes to the fate decision for a population under severe stress, we constructed an Escherichia coli strain crucially dependent on the expression of a rewired gene. The gene essential for tryptophan biosynthesis, trpC, was removed from the native regulatory unit, the Trp operon, and placed under the extraneous control of the lactose utilisation network. Bistability of the network provided the cells two discrete phenotypes: the induced and suppressed level of trpC. The two phenotypes permitted the cells to grow or not, respectively, under conditions of tryptophan depletion. We found that stochastic switching between the two states allowed the initially suppressed cells to form a new population with induced trpC in response to tryptophan starvation. However, the frequency of the transition from suppressed to induced state dropped off dramatically in the starved population, in comparison to that in the nourished population. This reduced switching rate was compensated by increasing the initial population size, which probably provided the cell population more chances to wait for the rarely appearing fit cells from the unfit cells. Taken together, adaptation of a starved bacterial population because of stochasticity in the gene rewired from the ancient regulon was experimentally confirmed, and the nutritional status and the population size played a great role in stochastic adaptation.
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spelling pubmed-31722152011-09-19 Stochastic Switching Induced Adaptation in a Starved Escherichia coli Population Shimizu, Yoshihiro Tsuru, Saburo Ito, Yoichiro Ying, Bei-Wen Yomo, Tetsuya PLoS One Research Article Population adaptation can be determined by stochastic switching in living cells. To examine how stochastic switching contributes to the fate decision for a population under severe stress, we constructed an Escherichia coli strain crucially dependent on the expression of a rewired gene. The gene essential for tryptophan biosynthesis, trpC, was removed from the native regulatory unit, the Trp operon, and placed under the extraneous control of the lactose utilisation network. Bistability of the network provided the cells two discrete phenotypes: the induced and suppressed level of trpC. The two phenotypes permitted the cells to grow or not, respectively, under conditions of tryptophan depletion. We found that stochastic switching between the two states allowed the initially suppressed cells to form a new population with induced trpC in response to tryptophan starvation. However, the frequency of the transition from suppressed to induced state dropped off dramatically in the starved population, in comparison to that in the nourished population. This reduced switching rate was compensated by increasing the initial population size, which probably provided the cell population more chances to wait for the rarely appearing fit cells from the unfit cells. Taken together, adaptation of a starved bacterial population because of stochasticity in the gene rewired from the ancient regulon was experimentally confirmed, and the nutritional status and the population size played a great role in stochastic adaptation. Public Library of Science 2011-09-13 /pmc/articles/PMC3172215/ /pubmed/21931628 http://dx.doi.org/10.1371/journal.pone.0023953 Text en Shimizu et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Shimizu, Yoshihiro
Tsuru, Saburo
Ito, Yoichiro
Ying, Bei-Wen
Yomo, Tetsuya
Stochastic Switching Induced Adaptation in a Starved Escherichia coli Population
title Stochastic Switching Induced Adaptation in a Starved Escherichia coli Population
title_full Stochastic Switching Induced Adaptation in a Starved Escherichia coli Population
title_fullStr Stochastic Switching Induced Adaptation in a Starved Escherichia coli Population
title_full_unstemmed Stochastic Switching Induced Adaptation in a Starved Escherichia coli Population
title_short Stochastic Switching Induced Adaptation in a Starved Escherichia coli Population
title_sort stochastic switching induced adaptation in a starved escherichia coli population
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3172215/
https://www.ncbi.nlm.nih.gov/pubmed/21931628
http://dx.doi.org/10.1371/journal.pone.0023953
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