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Functional Mapping of Dynamic Traits with Robust t-Distribution
Functional mapping has been a powerful tool in mapping quantitative trait loci (QTL) underlying dynamic traits of agricultural or biomedical interest. In functional mapping, multivariate normality is often assumed for the underlying data distribution, partially due to the ease of parameter estimatio...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178556/ https://www.ncbi.nlm.nih.gov/pubmed/21966378 http://dx.doi.org/10.1371/journal.pone.0024902 |
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author | Wu, Cen Li, Gengxin Zhu, Jun Cui, Yuehua |
author_facet | Wu, Cen Li, Gengxin Zhu, Jun Cui, Yuehua |
author_sort | Wu, Cen |
collection | PubMed |
description | Functional mapping has been a powerful tool in mapping quantitative trait loci (QTL) underlying dynamic traits of agricultural or biomedical interest. In functional mapping, multivariate normality is often assumed for the underlying data distribution, partially due to the ease of parameter estimation. The normality assumption however could be easily violated in real applications due to various reasons such as heavy tails or extreme observations. Departure from normality has negative effect on testing power and inference for QTL identification. In this work, we relax the normality assumption and propose a robust multivariate [Image: see text]-distribution mapping framework for QTL identification in functional mapping. Simulation studies show increased mapping power and precision with the [Image: see text] distribution than that of a normal distribution. The utility of the method is demonstrated through a real data analysis. |
format | Online Article Text |
id | pubmed-3178556 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-31785562011-09-30 Functional Mapping of Dynamic Traits with Robust t-Distribution Wu, Cen Li, Gengxin Zhu, Jun Cui, Yuehua PLoS One Research Article Functional mapping has been a powerful tool in mapping quantitative trait loci (QTL) underlying dynamic traits of agricultural or biomedical interest. In functional mapping, multivariate normality is often assumed for the underlying data distribution, partially due to the ease of parameter estimation. The normality assumption however could be easily violated in real applications due to various reasons such as heavy tails or extreme observations. Departure from normality has negative effect on testing power and inference for QTL identification. In this work, we relax the normality assumption and propose a robust multivariate [Image: see text]-distribution mapping framework for QTL identification in functional mapping. Simulation studies show increased mapping power and precision with the [Image: see text] distribution than that of a normal distribution. The utility of the method is demonstrated through a real data analysis. Public Library of Science 2011-09-22 /pmc/articles/PMC3178556/ /pubmed/21966378 http://dx.doi.org/10.1371/journal.pone.0024902 Text en Wu et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Wu, Cen Li, Gengxin Zhu, Jun Cui, Yuehua Functional Mapping of Dynamic Traits with Robust t-Distribution |
title | Functional Mapping of Dynamic Traits with Robust t-Distribution |
title_full | Functional Mapping of Dynamic Traits with Robust t-Distribution |
title_fullStr | Functional Mapping of Dynamic Traits with Robust t-Distribution |
title_full_unstemmed | Functional Mapping of Dynamic Traits with Robust t-Distribution |
title_short | Functional Mapping of Dynamic Traits with Robust t-Distribution |
title_sort | functional mapping of dynamic traits with robust t-distribution |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178556/ https://www.ncbi.nlm.nih.gov/pubmed/21966378 http://dx.doi.org/10.1371/journal.pone.0024902 |
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