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Functional Mapping of Dynamic Traits with Robust t-Distribution

Functional mapping has been a powerful tool in mapping quantitative trait loci (QTL) underlying dynamic traits of agricultural or biomedical interest. In functional mapping, multivariate normality is often assumed for the underlying data distribution, partially due to the ease of parameter estimatio...

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Detalles Bibliográficos
Autores principales: Wu, Cen, Li, Gengxin, Zhu, Jun, Cui, Yuehua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178556/
https://www.ncbi.nlm.nih.gov/pubmed/21966378
http://dx.doi.org/10.1371/journal.pone.0024902
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author Wu, Cen
Li, Gengxin
Zhu, Jun
Cui, Yuehua
author_facet Wu, Cen
Li, Gengxin
Zhu, Jun
Cui, Yuehua
author_sort Wu, Cen
collection PubMed
description Functional mapping has been a powerful tool in mapping quantitative trait loci (QTL) underlying dynamic traits of agricultural or biomedical interest. In functional mapping, multivariate normality is often assumed for the underlying data distribution, partially due to the ease of parameter estimation. The normality assumption however could be easily violated in real applications due to various reasons such as heavy tails or extreme observations. Departure from normality has negative effect on testing power and inference for QTL identification. In this work, we relax the normality assumption and propose a robust multivariate [Image: see text]-distribution mapping framework for QTL identification in functional mapping. Simulation studies show increased mapping power and precision with the [Image: see text] distribution than that of a normal distribution. The utility of the method is demonstrated through a real data analysis.
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spelling pubmed-31785562011-09-30 Functional Mapping of Dynamic Traits with Robust t-Distribution Wu, Cen Li, Gengxin Zhu, Jun Cui, Yuehua PLoS One Research Article Functional mapping has been a powerful tool in mapping quantitative trait loci (QTL) underlying dynamic traits of agricultural or biomedical interest. In functional mapping, multivariate normality is often assumed for the underlying data distribution, partially due to the ease of parameter estimation. The normality assumption however could be easily violated in real applications due to various reasons such as heavy tails or extreme observations. Departure from normality has negative effect on testing power and inference for QTL identification. In this work, we relax the normality assumption and propose a robust multivariate [Image: see text]-distribution mapping framework for QTL identification in functional mapping. Simulation studies show increased mapping power and precision with the [Image: see text] distribution than that of a normal distribution. The utility of the method is demonstrated through a real data analysis. Public Library of Science 2011-09-22 /pmc/articles/PMC3178556/ /pubmed/21966378 http://dx.doi.org/10.1371/journal.pone.0024902 Text en Wu et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Wu, Cen
Li, Gengxin
Zhu, Jun
Cui, Yuehua
Functional Mapping of Dynamic Traits with Robust t-Distribution
title Functional Mapping of Dynamic Traits with Robust t-Distribution
title_full Functional Mapping of Dynamic Traits with Robust t-Distribution
title_fullStr Functional Mapping of Dynamic Traits with Robust t-Distribution
title_full_unstemmed Functional Mapping of Dynamic Traits with Robust t-Distribution
title_short Functional Mapping of Dynamic Traits with Robust t-Distribution
title_sort functional mapping of dynamic traits with robust t-distribution
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178556/
https://www.ncbi.nlm.nih.gov/pubmed/21966378
http://dx.doi.org/10.1371/journal.pone.0024902
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