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Longitudinal exchange: an alternative strategy towards quantification of dynamics parameters in ZZ exchange spectroscopy
Longitudinal exchange experiments facilitate the quantification of the rates of interconversion between the exchanging species, along with their longitudinal relaxation rates, by analyzing the time-dependence of direct correlation and exchange cross peaks. Here we present a simple and robust alterna...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3180593/ https://www.ncbi.nlm.nih.gov/pubmed/21947921 http://dx.doi.org/10.1007/s10858-011-9547-8 |
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author | Kloiber, Karin Spitzer, Romana Grutsch, Sarina Kreutz, Christoph Tollinger, Martin |
author_facet | Kloiber, Karin Spitzer, Romana Grutsch, Sarina Kreutz, Christoph Tollinger, Martin |
author_sort | Kloiber, Karin |
collection | PubMed |
description | Longitudinal exchange experiments facilitate the quantification of the rates of interconversion between the exchanging species, along with their longitudinal relaxation rates, by analyzing the time-dependence of direct correlation and exchange cross peaks. Here we present a simple and robust alternative to this strategy, which is based on the combination of two complementary experiments, one with and one without resolving exchange cross peaks. We show that by combining the two data sets systematic errors that are caused by differential line-broadening of the exchanging species are avoided and reliable quantification of kinetic and relaxation parameters in the presence of additional conformational exchange on the ms–μs time scale is possible. The strategy is applied to a bistable DNA oligomer that displays different line-broadening in the two exchanging species. |
format | Online Article Text |
id | pubmed-3180593 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-31805932011-10-04 Longitudinal exchange: an alternative strategy towards quantification of dynamics parameters in ZZ exchange spectroscopy Kloiber, Karin Spitzer, Romana Grutsch, Sarina Kreutz, Christoph Tollinger, Martin J Biomol NMR Article Longitudinal exchange experiments facilitate the quantification of the rates of interconversion between the exchanging species, along with their longitudinal relaxation rates, by analyzing the time-dependence of direct correlation and exchange cross peaks. Here we present a simple and robust alternative to this strategy, which is based on the combination of two complementary experiments, one with and one without resolving exchange cross peaks. We show that by combining the two data sets systematic errors that are caused by differential line-broadening of the exchanging species are avoided and reliable quantification of kinetic and relaxation parameters in the presence of additional conformational exchange on the ms–μs time scale is possible. The strategy is applied to a bistable DNA oligomer that displays different line-broadening in the two exchanging species. Springer Netherlands 2011-09-27 2011 /pmc/articles/PMC3180593/ /pubmed/21947921 http://dx.doi.org/10.1007/s10858-011-9547-8 Text en © The Author(s) 2011 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited. |
spellingShingle | Article Kloiber, Karin Spitzer, Romana Grutsch, Sarina Kreutz, Christoph Tollinger, Martin Longitudinal exchange: an alternative strategy towards quantification of dynamics parameters in ZZ exchange spectroscopy |
title | Longitudinal exchange: an alternative strategy towards quantification of dynamics parameters in ZZ exchange spectroscopy |
title_full | Longitudinal exchange: an alternative strategy towards quantification of dynamics parameters in ZZ exchange spectroscopy |
title_fullStr | Longitudinal exchange: an alternative strategy towards quantification of dynamics parameters in ZZ exchange spectroscopy |
title_full_unstemmed | Longitudinal exchange: an alternative strategy towards quantification of dynamics parameters in ZZ exchange spectroscopy |
title_short | Longitudinal exchange: an alternative strategy towards quantification of dynamics parameters in ZZ exchange spectroscopy |
title_sort | longitudinal exchange: an alternative strategy towards quantification of dynamics parameters in zz exchange spectroscopy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3180593/ https://www.ncbi.nlm.nih.gov/pubmed/21947921 http://dx.doi.org/10.1007/s10858-011-9547-8 |
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