Cargando…

Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network

BACKGROUND: Vaccine literature indexing is poorly performed in PubMed due to limited hierarchy of Medical Subject Headings (MeSH) annotation in the vaccine field. Vaccine Ontology (VO) is a community-based biomedical ontology that represents various vaccines and their relations. SciMiner is an in-ho...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hur, Junguk, Xiang, Zuoshuang, Feldman, Eva L, He, Yongqun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3180695/ https://www.ncbi.nlm.nih.gov/pubmed/21871085 http://dx.doi.org/10.1186/1471-2172-12-49

Ejemplares similares

Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions
por: Hur, Junguk, et al.
Publicado: (2015)

Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining
por: Hur, Junguk, et al.
Publicado: (2012)

Literature Mining and Ontology based Analysis of Host-Brucella Gene–Gene Interaction Network
por: Karadeniz, İlknur, et al.
Publicado: (2015)

Ontology-based literature mining of E. coli vaccine-associated gene interaction networks
por: Hur, Junguk, et al.
Publicado: (2017)

Ontology-based representation and analysis of host-Brucella interactions
por: Lin, Yu, et al.
Publicado: (2015)

Bioinformatics analysis of Brucella vaccines and vaccine targets using VIOLIN
por: He, Yongqun, et al.
Publicado: (2010)

Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology
por: Özgür, Arzucan, et al.
Publicado: (2011)

A 2018 workshop: vaccine and drug ontology studies (VDOS 2018)
por: Hur, Junguk, et al.
Publicado: (2019)

The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature
por: Özgür, Arzucan, et al.
Publicado: (2016)

BBP: Brucella genome annotation with literature mining and curation
por: Xiang, Zuoshuang, et al.
Publicado: (2006)

Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology
por: Lin, Yu, et al.
Publicado: (2011)

Literature-Based Discovery of IFN-γ and Vaccine-Mediated Gene Interaction Networks
por: Özgür, Arzucan, et al.
Publicado: (2010)

Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs
por: Hur, Junguk, et al.
Publicado: (2018)

Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events
por: Guo, Abra, et al.
Publicado: (2016)

Meta-analysis of variables affecting mouse protection efficacy of whole organism Brucella vaccines and vaccine candidates
por: Todd, Thomas E, et al.
Publicado: (2013)

Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns
por: Xiang, Zuoshuang, et al.
Publicado: (2015)

Ontology-Based Combinatorial Comparative Analysis of Adverse Events Associated with Killed and Live Influenza Vaccines
por: Sarntivijai, Sirarat, et al.
Publicado: (2012)

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability
por: He, Yongqun, et al.
Publicado: (2018)

Vaxjo: A Web-Based Vaccine Adjuvant Database and Its Application for Analysis of Vaccine Adjuvants and Their Uses in Vaccine Development
por: Sayers, Samantha, et al.
Publicado: (2012)

Vaxign: The First Web-Based Vaccine Design Program for Reverse Vaccinology and Applications for Vaccine Development
por: He, Yongqun, et al.
Publicado: (2010)

Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology
por: Xiang, Zuoshuang, et al.
Publicado: (2013)

OntoFox: web-based support for ontology reuse
por: Xiang, Zuoshuang, et al.
Publicado: (2010)

A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks
por: Xiang, Zuoshuang, et al.
Publicado: (2013)

Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology
por: Zhang, Yuji, et al.
Publicado: (2013)

Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses
por: Lin, Yu, et al.
Publicado: (2012)

Vaccine and Drug Ontology Studies (VDOS 2014)
por: Tao, Cui, et al.
Publicado: (2016)

OAE: The Ontology of Adverse Events
por: He, Yongqun, et al.
Publicado: (2014)

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration
por: Ong, Edison, et al.
Publicado: (2017)

Analyses of Brucella Pathogenesis, Host Immunity, and Vaccine Targets using Systems Biology and Bioinformatics
por: He, Yongqun
Publicado: (2012)

DNAVaxDB: the first web-based DNA vaccine database and its data analysis
por: Racz, Rebecca, et al.
Publicado: (2014)

A 2013 workshop: vaccine and drug ontology studies (VDOS 2013)
por: Tao, Cui, et al.
Publicado: (2014)

VICO: Ontology-based representation and integrative analysis of Vaccination Informed Consent forms
por: Lin, Yu, et al.
Publicado: (2016)

Ontological modeling and analysis of experimentally or clinically verified drugs against coronavirus infection
por: Liu, Yingtong, et al.
Publicado: (2021)

Updates on the web-based VIOLIN vaccine database and analysis system
por: He, Yongqun, et al.
Publicado: (2014)

The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines
por: Marcos, Erica, et al.
Publicado: (2013)

RNA-seq reveals the critical role of OtpR in regulating Brucella melitensis metabolism and virulence under acidic stress
por: Liu, Wenxiao, et al.
Publicado: (2015)

Differential Adverse Event Profiles Associated with BCG as a Preventive Tuberculosis Vaccine or Therapeutic Bladder Cancer Vaccine Identified by Comparative Ontology-Based VAERS and Literature Meta-Analysis
por: Xie, Jiangan, et al.
Publicado: (2016)

The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events
por: Lin, Yu, et al.
Publicado: (2014)

Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs
por: Manuel, Warren, et al.
Publicado: (2022)

A 2012 Workshop: Vaccine and Drug Ontology in the Study of Mechanism and Effect (VDOSME 2012)
por: He, Yongqun, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_uelumeq7lkivsiic5l10bm21at