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The genome of the green anole lizard and a comparative analysis with birds and mammals
The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments(1). Among amniotes, genome sequences are available for mammals(2) and birds(...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3184186/ https://www.ncbi.nlm.nih.gov/pubmed/21881562 http://dx.doi.org/10.1038/nature10390 |
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author | Alföldi, Jessica Di Palma, Federica Grabherr, Manfred Williams, Christina Kong, Lesheng Mauceli, Evan Russell, Pamela Lowe, Craig B. Glor, Richard Jaffe, Jacob D. Ray, David A. Boissinot, Stephane Shedlock, Andrew M. Botka, Christopher Castoe, Todd A. Colbourne, John K. Fujita, Matthew K. Moreno, Ricardo Godinez ten Hallers, Boudewijn F. Haussler, David Heger, Andreas Heiman, David Janes, Daniel E. Johnson, Jeremy de Jong, Pieter J. Koriabine, Maxim Y. Novick, Peter Organ, Chris L. Peach, Sally E. Poe, Steven Pollock, David D. de Queiroz, Kevin Sanger, Thomas Searle, Steve Smith, Jeremy D. Smith, Zachary Swofford, Ross Turner-Maier, Jason Wade, Juli Young, Sarah Zadissa, Amonida Edwards, Scott V. Glenn, Travis C. Schneider, Christopher J. Losos, Jonathan B. Lander, Eric S. Breen, Matthew Ponting, Chris P. Lindblad-Toh, Kerstin |
author_facet | Alföldi, Jessica Di Palma, Federica Grabherr, Manfred Williams, Christina Kong, Lesheng Mauceli, Evan Russell, Pamela Lowe, Craig B. Glor, Richard Jaffe, Jacob D. Ray, David A. Boissinot, Stephane Shedlock, Andrew M. Botka, Christopher Castoe, Todd A. Colbourne, John K. Fujita, Matthew K. Moreno, Ricardo Godinez ten Hallers, Boudewijn F. Haussler, David Heger, Andreas Heiman, David Janes, Daniel E. Johnson, Jeremy de Jong, Pieter J. Koriabine, Maxim Y. Novick, Peter Organ, Chris L. Peach, Sally E. Poe, Steven Pollock, David D. de Queiroz, Kevin Sanger, Thomas Searle, Steve Smith, Jeremy D. Smith, Zachary Swofford, Ross Turner-Maier, Jason Wade, Juli Young, Sarah Zadissa, Amonida Edwards, Scott V. Glenn, Travis C. Schneider, Christopher J. Losos, Jonathan B. Lander, Eric S. Breen, Matthew Ponting, Chris P. Lindblad-Toh, Kerstin |
author_sort | Alföldi, Jessica |
collection | PubMed |
description | The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments(1). Among amniotes, genome sequences are available for mammals(2) and birds(3–5), but not for non-avian reptiles. Here we report the genome sequence of the North American green anole lizard, Anolis carolinensis. We find that A. carolinensis microchromosomes are highly syntenic with chicken microchromosomes, yet do not exhibit the high GC and low repeat content that are characteristic of avian microchromosomes(3). Also, A. carolinensis mobile elements are very young and diverse – more so than in any other sequenced amniote genome. This lizard genome’s GC content is also unusual in its homogeneity, unlike the regionally variable GC content found in mammals and birds(6). We describe and assign sequence to the previously unknown A. carolinensis X chromosome. Comparative gene analysis shows that amniote egg proteins have evolved significantly more rapidly than other proteins. An anole phylogeny resolves basal branches to illuminate the history of their repeated adaptive radiations. |
format | Online Article Text |
id | pubmed-3184186 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
record_format | MEDLINE/PubMed |
spelling | pubmed-31841862012-03-29 The genome of the green anole lizard and a comparative analysis with birds and mammals Alföldi, Jessica Di Palma, Federica Grabherr, Manfred Williams, Christina Kong, Lesheng Mauceli, Evan Russell, Pamela Lowe, Craig B. Glor, Richard Jaffe, Jacob D. Ray, David A. Boissinot, Stephane Shedlock, Andrew M. Botka, Christopher Castoe, Todd A. Colbourne, John K. Fujita, Matthew K. Moreno, Ricardo Godinez ten Hallers, Boudewijn F. Haussler, David Heger, Andreas Heiman, David Janes, Daniel E. Johnson, Jeremy de Jong, Pieter J. Koriabine, Maxim Y. Novick, Peter Organ, Chris L. Peach, Sally E. Poe, Steven Pollock, David D. de Queiroz, Kevin Sanger, Thomas Searle, Steve Smith, Jeremy D. Smith, Zachary Swofford, Ross Turner-Maier, Jason Wade, Juli Young, Sarah Zadissa, Amonida Edwards, Scott V. Glenn, Travis C. Schneider, Christopher J. Losos, Jonathan B. Lander, Eric S. Breen, Matthew Ponting, Chris P. Lindblad-Toh, Kerstin Nature Article The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments(1). Among amniotes, genome sequences are available for mammals(2) and birds(3–5), but not for non-avian reptiles. Here we report the genome sequence of the North American green anole lizard, Anolis carolinensis. We find that A. carolinensis microchromosomes are highly syntenic with chicken microchromosomes, yet do not exhibit the high GC and low repeat content that are characteristic of avian microchromosomes(3). Also, A. carolinensis mobile elements are very young and diverse – more so than in any other sequenced amniote genome. This lizard genome’s GC content is also unusual in its homogeneity, unlike the regionally variable GC content found in mammals and birds(6). We describe and assign sequence to the previously unknown A. carolinensis X chromosome. Comparative gene analysis shows that amniote egg proteins have evolved significantly more rapidly than other proteins. An anole phylogeny resolves basal branches to illuminate the history of their repeated adaptive radiations. 2011-08-31 /pmc/articles/PMC3184186/ /pubmed/21881562 http://dx.doi.org/10.1038/nature10390 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Alföldi, Jessica Di Palma, Federica Grabherr, Manfred Williams, Christina Kong, Lesheng Mauceli, Evan Russell, Pamela Lowe, Craig B. Glor, Richard Jaffe, Jacob D. Ray, David A. Boissinot, Stephane Shedlock, Andrew M. Botka, Christopher Castoe, Todd A. Colbourne, John K. Fujita, Matthew K. Moreno, Ricardo Godinez ten Hallers, Boudewijn F. Haussler, David Heger, Andreas Heiman, David Janes, Daniel E. Johnson, Jeremy de Jong, Pieter J. Koriabine, Maxim Y. Novick, Peter Organ, Chris L. Peach, Sally E. Poe, Steven Pollock, David D. de Queiroz, Kevin Sanger, Thomas Searle, Steve Smith, Jeremy D. Smith, Zachary Swofford, Ross Turner-Maier, Jason Wade, Juli Young, Sarah Zadissa, Amonida Edwards, Scott V. Glenn, Travis C. Schneider, Christopher J. Losos, Jonathan B. Lander, Eric S. Breen, Matthew Ponting, Chris P. Lindblad-Toh, Kerstin The genome of the green anole lizard and a comparative analysis with birds and mammals |
title | The genome of the green anole lizard and a comparative analysis with birds and mammals |
title_full | The genome of the green anole lizard and a comparative analysis with birds and mammals |
title_fullStr | The genome of the green anole lizard and a comparative analysis with birds and mammals |
title_full_unstemmed | The genome of the green anole lizard and a comparative analysis with birds and mammals |
title_short | The genome of the green anole lizard and a comparative analysis with birds and mammals |
title_sort | genome of the green anole lizard and a comparative analysis with birds and mammals |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3184186/ https://www.ncbi.nlm.nih.gov/pubmed/21881562 http://dx.doi.org/10.1038/nature10390 |
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