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The genome of the green anole lizard and a comparative analysis with birds and mammals

The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments(1). Among amniotes, genome sequences are available for mammals(2) and birds(...

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Autores principales: Alföldi, Jessica, Di Palma, Federica, Grabherr, Manfred, Williams, Christina, Kong, Lesheng, Mauceli, Evan, Russell, Pamela, Lowe, Craig B., Glor, Richard, Jaffe, Jacob D., Ray, David A., Boissinot, Stephane, Shedlock, Andrew M., Botka, Christopher, Castoe, Todd A., Colbourne, John K., Fujita, Matthew K., Moreno, Ricardo Godinez, ten Hallers, Boudewijn F., Haussler, David, Heger, Andreas, Heiman, David, Janes, Daniel E., Johnson, Jeremy, de Jong, Pieter J., Koriabine, Maxim Y., Novick, Peter, Organ, Chris L., Peach, Sally E., Poe, Steven, Pollock, David D., de Queiroz, Kevin, Sanger, Thomas, Searle, Steve, Smith, Jeremy D., Smith, Zachary, Swofford, Ross, Turner-Maier, Jason, Wade, Juli, Young, Sarah, Zadissa, Amonida, Edwards, Scott V., Glenn, Travis C., Schneider, Christopher J., Losos, Jonathan B., Lander, Eric S., Breen, Matthew, Ponting, Chris P., Lindblad-Toh, Kerstin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3184186/
https://www.ncbi.nlm.nih.gov/pubmed/21881562
http://dx.doi.org/10.1038/nature10390
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author Alföldi, Jessica
Di Palma, Federica
Grabherr, Manfred
Williams, Christina
Kong, Lesheng
Mauceli, Evan
Russell, Pamela
Lowe, Craig B.
Glor, Richard
Jaffe, Jacob D.
Ray, David A.
Boissinot, Stephane
Shedlock, Andrew M.
Botka, Christopher
Castoe, Todd A.
Colbourne, John K.
Fujita, Matthew K.
Moreno, Ricardo Godinez
ten Hallers, Boudewijn F.
Haussler, David
Heger, Andreas
Heiman, David
Janes, Daniel E.
Johnson, Jeremy
de Jong, Pieter J.
Koriabine, Maxim Y.
Novick, Peter
Organ, Chris L.
Peach, Sally E.
Poe, Steven
Pollock, David D.
de Queiroz, Kevin
Sanger, Thomas
Searle, Steve
Smith, Jeremy D.
Smith, Zachary
Swofford, Ross
Turner-Maier, Jason
Wade, Juli
Young, Sarah
Zadissa, Amonida
Edwards, Scott V.
Glenn, Travis C.
Schneider, Christopher J.
Losos, Jonathan B.
Lander, Eric S.
Breen, Matthew
Ponting, Chris P.
Lindblad-Toh, Kerstin
author_facet Alföldi, Jessica
Di Palma, Federica
Grabherr, Manfred
Williams, Christina
Kong, Lesheng
Mauceli, Evan
Russell, Pamela
Lowe, Craig B.
Glor, Richard
Jaffe, Jacob D.
Ray, David A.
Boissinot, Stephane
Shedlock, Andrew M.
Botka, Christopher
Castoe, Todd A.
Colbourne, John K.
Fujita, Matthew K.
Moreno, Ricardo Godinez
ten Hallers, Boudewijn F.
Haussler, David
Heger, Andreas
Heiman, David
Janes, Daniel E.
Johnson, Jeremy
de Jong, Pieter J.
Koriabine, Maxim Y.
Novick, Peter
Organ, Chris L.
Peach, Sally E.
Poe, Steven
Pollock, David D.
de Queiroz, Kevin
Sanger, Thomas
Searle, Steve
Smith, Jeremy D.
Smith, Zachary
Swofford, Ross
Turner-Maier, Jason
Wade, Juli
Young, Sarah
Zadissa, Amonida
Edwards, Scott V.
Glenn, Travis C.
Schneider, Christopher J.
Losos, Jonathan B.
Lander, Eric S.
Breen, Matthew
Ponting, Chris P.
Lindblad-Toh, Kerstin
author_sort Alföldi, Jessica
collection PubMed
description The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments(1). Among amniotes, genome sequences are available for mammals(2) and birds(3–5), but not for non-avian reptiles. Here we report the genome sequence of the North American green anole lizard, Anolis carolinensis. We find that A. carolinensis microchromosomes are highly syntenic with chicken microchromosomes, yet do not exhibit the high GC and low repeat content that are characteristic of avian microchromosomes(3). Also, A. carolinensis mobile elements are very young and diverse – more so than in any other sequenced amniote genome. This lizard genome’s GC content is also unusual in its homogeneity, unlike the regionally variable GC content found in mammals and birds(6). We describe and assign sequence to the previously unknown A. carolinensis X chromosome. Comparative gene analysis shows that amniote egg proteins have evolved significantly more rapidly than other proteins. An anole phylogeny resolves basal branches to illuminate the history of their repeated adaptive radiations.
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spelling pubmed-31841862012-03-29 The genome of the green anole lizard and a comparative analysis with birds and mammals Alföldi, Jessica Di Palma, Federica Grabherr, Manfred Williams, Christina Kong, Lesheng Mauceli, Evan Russell, Pamela Lowe, Craig B. Glor, Richard Jaffe, Jacob D. Ray, David A. Boissinot, Stephane Shedlock, Andrew M. Botka, Christopher Castoe, Todd A. Colbourne, John K. Fujita, Matthew K. Moreno, Ricardo Godinez ten Hallers, Boudewijn F. Haussler, David Heger, Andreas Heiman, David Janes, Daniel E. Johnson, Jeremy de Jong, Pieter J. Koriabine, Maxim Y. Novick, Peter Organ, Chris L. Peach, Sally E. Poe, Steven Pollock, David D. de Queiroz, Kevin Sanger, Thomas Searle, Steve Smith, Jeremy D. Smith, Zachary Swofford, Ross Turner-Maier, Jason Wade, Juli Young, Sarah Zadissa, Amonida Edwards, Scott V. Glenn, Travis C. Schneider, Christopher J. Losos, Jonathan B. Lander, Eric S. Breen, Matthew Ponting, Chris P. Lindblad-Toh, Kerstin Nature Article The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments(1). Among amniotes, genome sequences are available for mammals(2) and birds(3–5), but not for non-avian reptiles. Here we report the genome sequence of the North American green anole lizard, Anolis carolinensis. We find that A. carolinensis microchromosomes are highly syntenic with chicken microchromosomes, yet do not exhibit the high GC and low repeat content that are characteristic of avian microchromosomes(3). Also, A. carolinensis mobile elements are very young and diverse – more so than in any other sequenced amniote genome. This lizard genome’s GC content is also unusual in its homogeneity, unlike the regionally variable GC content found in mammals and birds(6). We describe and assign sequence to the previously unknown A. carolinensis X chromosome. Comparative gene analysis shows that amniote egg proteins have evolved significantly more rapidly than other proteins. An anole phylogeny resolves basal branches to illuminate the history of their repeated adaptive radiations. 2011-08-31 /pmc/articles/PMC3184186/ /pubmed/21881562 http://dx.doi.org/10.1038/nature10390 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Alföldi, Jessica
Di Palma, Federica
Grabherr, Manfred
Williams, Christina
Kong, Lesheng
Mauceli, Evan
Russell, Pamela
Lowe, Craig B.
Glor, Richard
Jaffe, Jacob D.
Ray, David A.
Boissinot, Stephane
Shedlock, Andrew M.
Botka, Christopher
Castoe, Todd A.
Colbourne, John K.
Fujita, Matthew K.
Moreno, Ricardo Godinez
ten Hallers, Boudewijn F.
Haussler, David
Heger, Andreas
Heiman, David
Janes, Daniel E.
Johnson, Jeremy
de Jong, Pieter J.
Koriabine, Maxim Y.
Novick, Peter
Organ, Chris L.
Peach, Sally E.
Poe, Steven
Pollock, David D.
de Queiroz, Kevin
Sanger, Thomas
Searle, Steve
Smith, Jeremy D.
Smith, Zachary
Swofford, Ross
Turner-Maier, Jason
Wade, Juli
Young, Sarah
Zadissa, Amonida
Edwards, Scott V.
Glenn, Travis C.
Schneider, Christopher J.
Losos, Jonathan B.
Lander, Eric S.
Breen, Matthew
Ponting, Chris P.
Lindblad-Toh, Kerstin
The genome of the green anole lizard and a comparative analysis with birds and mammals
title The genome of the green anole lizard and a comparative analysis with birds and mammals
title_full The genome of the green anole lizard and a comparative analysis with birds and mammals
title_fullStr The genome of the green anole lizard and a comparative analysis with birds and mammals
title_full_unstemmed The genome of the green anole lizard and a comparative analysis with birds and mammals
title_short The genome of the green anole lizard and a comparative analysis with birds and mammals
title_sort genome of the green anole lizard and a comparative analysis with birds and mammals
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3184186/
https://www.ncbi.nlm.nih.gov/pubmed/21881562
http://dx.doi.org/10.1038/nature10390
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