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Complete Genomic Sequence of Bacteriophage Felix O1(†)
Bacteriophage O1 is a Myoviridae A1 group member used historically for identifying Salmonella. Sequencing revealed a single, linear, 86,155-base-pair genome with 39% average G+C content, 131 open reading frames, and 22 tRNAs. Closest protein homologs occur in Erwinia amylovora phage φEa21-4 and Esch...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Molecular Diversity Preservation International (MDPI)
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3185647/ https://www.ncbi.nlm.nih.gov/pubmed/21994654 http://dx.doi.org/10.3390/v2030710 |
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author | Whichard, Jean M. Weigt, Lee A. Borris, Douglas J. Li, Ling Ling Zhang, Qing Kapur, Vivek Pierson, F. William Lingohr, Erika J. She, Yi-Min Kropinski, Andrew M. Sriranganathan, Nammalwar |
author_facet | Whichard, Jean M. Weigt, Lee A. Borris, Douglas J. Li, Ling Ling Zhang, Qing Kapur, Vivek Pierson, F. William Lingohr, Erika J. She, Yi-Min Kropinski, Andrew M. Sriranganathan, Nammalwar |
author_sort | Whichard, Jean M. |
collection | PubMed |
description | Bacteriophage O1 is a Myoviridae A1 group member used historically for identifying Salmonella. Sequencing revealed a single, linear, 86,155-base-pair genome with 39% average G+C content, 131 open reading frames, and 22 tRNAs. Closest protein homologs occur in Erwinia amylovora phage φEa21-4 and Escherichia coli phage wV8. Proteomic analysis indentified structural proteins: Gp23, Gp36 (major tail protein), Gp49, Gp53, Gp54, Gp55, Gp57, Gp58 (major capsid protein), Gp59, Gp63, Gp64, Gp67, Gp68, Gp69, Gp73, Gp74 and Gp77 (tail fiber). Based on phage-host codon differences, 7 tRNAs could affect translation rate during infection. Introns, holin-lysin cassettes, bacterial toxin homologs and host RNA polymerase-modifying genes were absent. |
format | Online Article Text |
id | pubmed-3185647 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Molecular Diversity Preservation International (MDPI) |
record_format | MEDLINE/PubMed |
spelling | pubmed-31856472011-10-12 Complete Genomic Sequence of Bacteriophage Felix O1(†) Whichard, Jean M. Weigt, Lee A. Borris, Douglas J. Li, Ling Ling Zhang, Qing Kapur, Vivek Pierson, F. William Lingohr, Erika J. She, Yi-Min Kropinski, Andrew M. Sriranganathan, Nammalwar Viruses Article Bacteriophage O1 is a Myoviridae A1 group member used historically for identifying Salmonella. Sequencing revealed a single, linear, 86,155-base-pair genome with 39% average G+C content, 131 open reading frames, and 22 tRNAs. Closest protein homologs occur in Erwinia amylovora phage φEa21-4 and Escherichia coli phage wV8. Proteomic analysis indentified structural proteins: Gp23, Gp36 (major tail protein), Gp49, Gp53, Gp54, Gp55, Gp57, Gp58 (major capsid protein), Gp59, Gp63, Gp64, Gp67, Gp68, Gp69, Gp73, Gp74 and Gp77 (tail fiber). Based on phage-host codon differences, 7 tRNAs could affect translation rate during infection. Introns, holin-lysin cassettes, bacterial toxin homologs and host RNA polymerase-modifying genes were absent. Molecular Diversity Preservation International (MDPI) 2010-03-09 /pmc/articles/PMC3185647/ /pubmed/21994654 http://dx.doi.org/10.3390/v2030710 Text en © 2010 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0 This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/). |
spellingShingle | Article Whichard, Jean M. Weigt, Lee A. Borris, Douglas J. Li, Ling Ling Zhang, Qing Kapur, Vivek Pierson, F. William Lingohr, Erika J. She, Yi-Min Kropinski, Andrew M. Sriranganathan, Nammalwar Complete Genomic Sequence of Bacteriophage Felix O1(†) |
title | Complete Genomic Sequence of Bacteriophage Felix O1(†) |
title_full | Complete Genomic Sequence of Bacteriophage Felix O1(†) |
title_fullStr | Complete Genomic Sequence of Bacteriophage Felix O1(†) |
title_full_unstemmed | Complete Genomic Sequence of Bacteriophage Felix O1(†) |
title_short | Complete Genomic Sequence of Bacteriophage Felix O1(†) |
title_sort | complete genomic sequence of bacteriophage felix o1(†) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3185647/ https://www.ncbi.nlm.nih.gov/pubmed/21994654 http://dx.doi.org/10.3390/v2030710 |
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