Cargando…

Complete Genomic Sequence of Bacteriophage Felix O1(†)

Bacteriophage O1 is a Myoviridae A1 group member used historically for identifying Salmonella. Sequencing revealed a single, linear, 86,155-base-pair genome with 39% average G+C content, 131 open reading frames, and 22 tRNAs. Closest protein homologs occur in Erwinia amylovora phage φEa21-4 and Esch...

Descripción completa

Detalles Bibliográficos
Autores principales: Whichard, Jean M., Weigt, Lee A., Borris, Douglas J., Li, Ling Ling, Zhang, Qing, Kapur, Vivek, Pierson, F. William, Lingohr, Erika J., She, Yi-Min, Kropinski, Andrew M., Sriranganathan, Nammalwar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Molecular Diversity Preservation International (MDPI) 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3185647/
https://www.ncbi.nlm.nih.gov/pubmed/21994654
http://dx.doi.org/10.3390/v2030710
_version_ 1782213245481779200
author Whichard, Jean M.
Weigt, Lee A.
Borris, Douglas J.
Li, Ling Ling
Zhang, Qing
Kapur, Vivek
Pierson, F. William
Lingohr, Erika J.
She, Yi-Min
Kropinski, Andrew M.
Sriranganathan, Nammalwar
author_facet Whichard, Jean M.
Weigt, Lee A.
Borris, Douglas J.
Li, Ling Ling
Zhang, Qing
Kapur, Vivek
Pierson, F. William
Lingohr, Erika J.
She, Yi-Min
Kropinski, Andrew M.
Sriranganathan, Nammalwar
author_sort Whichard, Jean M.
collection PubMed
description Bacteriophage O1 is a Myoviridae A1 group member used historically for identifying Salmonella. Sequencing revealed a single, linear, 86,155-base-pair genome with 39% average G+C content, 131 open reading frames, and 22 tRNAs. Closest protein homologs occur in Erwinia amylovora phage φEa21-4 and Escherichia coli phage wV8. Proteomic analysis indentified structural proteins: Gp23, Gp36 (major tail protein), Gp49, Gp53, Gp54, Gp55, Gp57, Gp58 (major capsid protein), Gp59, Gp63, Gp64, Gp67, Gp68, Gp69, Gp73, Gp74 and Gp77 (tail fiber). Based on phage-host codon differences, 7 tRNAs could affect translation rate during infection. Introns, holin-lysin cassettes, bacterial toxin homologs and host RNA polymerase-modifying genes were absent.
format Online
Article
Text
id pubmed-3185647
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher Molecular Diversity Preservation International (MDPI)
record_format MEDLINE/PubMed
spelling pubmed-31856472011-10-12 Complete Genomic Sequence of Bacteriophage Felix O1(†) Whichard, Jean M. Weigt, Lee A. Borris, Douglas J. Li, Ling Ling Zhang, Qing Kapur, Vivek Pierson, F. William Lingohr, Erika J. She, Yi-Min Kropinski, Andrew M. Sriranganathan, Nammalwar Viruses Article Bacteriophage O1 is a Myoviridae A1 group member used historically for identifying Salmonella. Sequencing revealed a single, linear, 86,155-base-pair genome with 39% average G+C content, 131 open reading frames, and 22 tRNAs. Closest protein homologs occur in Erwinia amylovora phage φEa21-4 and Escherichia coli phage wV8. Proteomic analysis indentified structural proteins: Gp23, Gp36 (major tail protein), Gp49, Gp53, Gp54, Gp55, Gp57, Gp58 (major capsid protein), Gp59, Gp63, Gp64, Gp67, Gp68, Gp69, Gp73, Gp74 and Gp77 (tail fiber). Based on phage-host codon differences, 7 tRNAs could affect translation rate during infection. Introns, holin-lysin cassettes, bacterial toxin homologs and host RNA polymerase-modifying genes were absent. Molecular Diversity Preservation International (MDPI) 2010-03-09 /pmc/articles/PMC3185647/ /pubmed/21994654 http://dx.doi.org/10.3390/v2030710 Text en © 2010 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0 This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Whichard, Jean M.
Weigt, Lee A.
Borris, Douglas J.
Li, Ling Ling
Zhang, Qing
Kapur, Vivek
Pierson, F. William
Lingohr, Erika J.
She, Yi-Min
Kropinski, Andrew M.
Sriranganathan, Nammalwar
Complete Genomic Sequence of Bacteriophage Felix O1(†)
title Complete Genomic Sequence of Bacteriophage Felix O1(†)
title_full Complete Genomic Sequence of Bacteriophage Felix O1(†)
title_fullStr Complete Genomic Sequence of Bacteriophage Felix O1(†)
title_full_unstemmed Complete Genomic Sequence of Bacteriophage Felix O1(†)
title_short Complete Genomic Sequence of Bacteriophage Felix O1(†)
title_sort complete genomic sequence of bacteriophage felix o1(†)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3185647/
https://www.ncbi.nlm.nih.gov/pubmed/21994654
http://dx.doi.org/10.3390/v2030710
work_keys_str_mv AT whichardjeanm completegenomicsequenceofbacteriophagefelixo1
AT weigtleea completegenomicsequenceofbacteriophagefelixo1
AT borrisdouglasj completegenomicsequenceofbacteriophagefelixo1
AT lilingling completegenomicsequenceofbacteriophagefelixo1
AT zhangqing completegenomicsequenceofbacteriophagefelixo1
AT kapurvivek completegenomicsequenceofbacteriophagefelixo1
AT piersonfwilliam completegenomicsequenceofbacteriophagefelixo1
AT lingohrerikaj completegenomicsequenceofbacteriophagefelixo1
AT sheyimin completegenomicsequenceofbacteriophagefelixo1
AT kropinskiandrewm completegenomicsequenceofbacteriophagefelixo1
AT sriranganathannammalwar completegenomicsequenceofbacteriophagefelixo1