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Sequencing technologies and genome sequencing

The high-throughput - next generation sequencing (HT-NGS) technologies are currently the hottest topic in the field of human and animals genomics researches, which can produce over 100 times more data compared to the most sophisticated capillary sequencers based on the Sanger method. With the ongoin...

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Autores principales: Pareek, Chandra Shekhar, Smoczynski, Rafal, Tretyn, Andrzej
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer-Verlag 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3189340/
https://www.ncbi.nlm.nih.gov/pubmed/21698376
http://dx.doi.org/10.1007/s13353-011-0057-x
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author Pareek, Chandra Shekhar
Smoczynski, Rafal
Tretyn, Andrzej
author_facet Pareek, Chandra Shekhar
Smoczynski, Rafal
Tretyn, Andrzej
author_sort Pareek, Chandra Shekhar
collection PubMed
description The high-throughput - next generation sequencing (HT-NGS) technologies are currently the hottest topic in the field of human and animals genomics researches, which can produce over 100 times more data compared to the most sophisticated capillary sequencers based on the Sanger method. With the ongoing developments of high throughput sequencing machines and advancement of modern bioinformatics tools at unprecedented pace, the target goal of sequencing individual genomes of living organism at a cost of $1,000 each is seemed to be realistically feasible in the near future. In the relatively short time frame since 2005, the HT-NGS technologies are revolutionizing the human and animal genome researches by analysis of chromatin immunoprecipitation coupled to DNA microarray (ChIP-chip) or sequencing (ChIP-seq), RNA sequencing (RNA-seq), whole genome genotyping, genome wide structural variation, de novo assembling and re-assembling of genome, mutation detection and carrier screening, detection of inherited disorders and complex human diseases, DNA library preparation, paired ends and genomic captures, sequencing of mitochondrial genome and personal genomics. In this review, we addressed the important features of HT-NGS like, first generation DNA sequencers, birth of HT-NGS, second generation HT-NGS platforms, third generation HT-NGS platforms: including single molecule Heliscope™, SMRT™ and RNAP sequencers, Nanopore, Archon Genomics X PRIZE foundation, comparison of second and third HT-NGS platforms, applications, advances and future perspectives of sequencing technologies on human and animal genome research.
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spelling pubmed-31893402011-10-12 Sequencing technologies and genome sequencing Pareek, Chandra Shekhar Smoczynski, Rafal Tretyn, Andrzej J Appl Genet Human Genetics • Review The high-throughput - next generation sequencing (HT-NGS) technologies are currently the hottest topic in the field of human and animals genomics researches, which can produce over 100 times more data compared to the most sophisticated capillary sequencers based on the Sanger method. With the ongoing developments of high throughput sequencing machines and advancement of modern bioinformatics tools at unprecedented pace, the target goal of sequencing individual genomes of living organism at a cost of $1,000 each is seemed to be realistically feasible in the near future. In the relatively short time frame since 2005, the HT-NGS technologies are revolutionizing the human and animal genome researches by analysis of chromatin immunoprecipitation coupled to DNA microarray (ChIP-chip) or sequencing (ChIP-seq), RNA sequencing (RNA-seq), whole genome genotyping, genome wide structural variation, de novo assembling and re-assembling of genome, mutation detection and carrier screening, detection of inherited disorders and complex human diseases, DNA library preparation, paired ends and genomic captures, sequencing of mitochondrial genome and personal genomics. In this review, we addressed the important features of HT-NGS like, first generation DNA sequencers, birth of HT-NGS, second generation HT-NGS platforms, third generation HT-NGS platforms: including single molecule Heliscope™, SMRT™ and RNAP sequencers, Nanopore, Archon Genomics X PRIZE foundation, comparison of second and third HT-NGS platforms, applications, advances and future perspectives of sequencing technologies on human and animal genome research. Springer-Verlag 2011-06-23 2011 /pmc/articles/PMC3189340/ /pubmed/21698376 http://dx.doi.org/10.1007/s13353-011-0057-x Text en © The Author(s) 2011 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.
spellingShingle Human Genetics • Review
Pareek, Chandra Shekhar
Smoczynski, Rafal
Tretyn, Andrzej
Sequencing technologies and genome sequencing
title Sequencing technologies and genome sequencing
title_full Sequencing technologies and genome sequencing
title_fullStr Sequencing technologies and genome sequencing
title_full_unstemmed Sequencing technologies and genome sequencing
title_short Sequencing technologies and genome sequencing
title_sort sequencing technologies and genome sequencing
topic Human Genetics • Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3189340/
https://www.ncbi.nlm.nih.gov/pubmed/21698376
http://dx.doi.org/10.1007/s13353-011-0057-x
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