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Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy

We have developed a method for automated probabilistic reconstruction of a set of major white-matter pathways from diffusion-weighted MR images. Our method is called TRACULA (TRActs Constrained by UnderLying Anatomy) and utilizes prior information on the anatomy of the pathways from a set of trainin...

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Autores principales: Yendiki, Anastasia, Panneck, Patricia, Srinivasan, Priti, Stevens, Allison, Zöllei, Lilla, Augustinack, Jean, Wang, Ruopeng, Salat, David, Ehrlich, Stefan, Behrens, Tim, Jbabdi, Saad, Gollub, Randy, Fischl, Bruce
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Research Foundation 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3193073/
https://www.ncbi.nlm.nih.gov/pubmed/22016733
http://dx.doi.org/10.3389/fninf.2011.00023
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author Yendiki, Anastasia
Panneck, Patricia
Srinivasan, Priti
Stevens, Allison
Zöllei, Lilla
Augustinack, Jean
Wang, Ruopeng
Salat, David
Ehrlich, Stefan
Behrens, Tim
Jbabdi, Saad
Gollub, Randy
Fischl, Bruce
author_facet Yendiki, Anastasia
Panneck, Patricia
Srinivasan, Priti
Stevens, Allison
Zöllei, Lilla
Augustinack, Jean
Wang, Ruopeng
Salat, David
Ehrlich, Stefan
Behrens, Tim
Jbabdi, Saad
Gollub, Randy
Fischl, Bruce
author_sort Yendiki, Anastasia
collection PubMed
description We have developed a method for automated probabilistic reconstruction of a set of major white-matter pathways from diffusion-weighted MR images. Our method is called TRACULA (TRActs Constrained by UnderLying Anatomy) and utilizes prior information on the anatomy of the pathways from a set of training subjects. By incorporating this prior knowledge in the reconstruction procedure, our method obviates the need for manual interaction with the tract solutions at a later stage and thus facilitates the application of tractography to large studies. In this paper we illustrate the application of the method on data from a schizophrenia study and investigate whether the inclusion of both patients and healthy subjects in the training set affects our ability to reconstruct the pathways reliably. We show that, since our method does not constrain the exact spatial location or shape of the pathways but only their trajectory relative to the surrounding anatomical structures, a set a of healthy training subjects can be used to reconstruct the pathways accurately in patients as well as in controls.
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spelling pubmed-31930732011-10-20 Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy Yendiki, Anastasia Panneck, Patricia Srinivasan, Priti Stevens, Allison Zöllei, Lilla Augustinack, Jean Wang, Ruopeng Salat, David Ehrlich, Stefan Behrens, Tim Jbabdi, Saad Gollub, Randy Fischl, Bruce Front Neuroinform Neuroscience We have developed a method for automated probabilistic reconstruction of a set of major white-matter pathways from diffusion-weighted MR images. Our method is called TRACULA (TRActs Constrained by UnderLying Anatomy) and utilizes prior information on the anatomy of the pathways from a set of training subjects. By incorporating this prior knowledge in the reconstruction procedure, our method obviates the need for manual interaction with the tract solutions at a later stage and thus facilitates the application of tractography to large studies. In this paper we illustrate the application of the method on data from a schizophrenia study and investigate whether the inclusion of both patients and healthy subjects in the training set affects our ability to reconstruct the pathways reliably. We show that, since our method does not constrain the exact spatial location or shape of the pathways but only their trajectory relative to the surrounding anatomical structures, a set a of healthy training subjects can be used to reconstruct the pathways accurately in patients as well as in controls. Frontiers Research Foundation 2011-10-14 /pmc/articles/PMC3193073/ /pubmed/22016733 http://dx.doi.org/10.3389/fninf.2011.00023 Text en Copyright © 2011 Yendiki, Panneck, Srinivasan, Stevens, Zöllei, Augustinack, Wang, Salat, Ehrlich, Behrens, Jbabdi, Gollub and Fischl. http://www.frontiersin.org/licenseagreement This is an open-access article subject to a non-exclusive license between the authors and Frontiers Media SA, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and other Frontiers conditions are complied with.
spellingShingle Neuroscience
Yendiki, Anastasia
Panneck, Patricia
Srinivasan, Priti
Stevens, Allison
Zöllei, Lilla
Augustinack, Jean
Wang, Ruopeng
Salat, David
Ehrlich, Stefan
Behrens, Tim
Jbabdi, Saad
Gollub, Randy
Fischl, Bruce
Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy
title Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy
title_full Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy
title_fullStr Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy
title_full_unstemmed Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy
title_short Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy
title_sort automated probabilistic reconstruction of white-matter pathways in health and disease using an atlas of the underlying anatomy
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3193073/
https://www.ncbi.nlm.nih.gov/pubmed/22016733
http://dx.doi.org/10.3389/fninf.2011.00023
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