Cargando…

Negation detection in Swedish clinical text: An adaption of NegEx to Swedish

BACKGROUND: Most methods for negation detection in clinical text have been developed for English text, and there is a need for evaluating the feasibility of adapting these methods to other languages. A Swedish adaption of the English rule-based negation detection system NegEx, which detects negation...

Descripción completa

Detalles Bibliográficos
Autor principal: Skeppstedt, Maria
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194175/
https://www.ncbi.nlm.nih.gov/pubmed/21992616
http://dx.doi.org/10.1186/2041-1480-2-S3-S3
_version_ 1782213923384066048
author Skeppstedt, Maria
author_facet Skeppstedt, Maria
author_sort Skeppstedt, Maria
collection PubMed
description BACKGROUND: Most methods for negation detection in clinical text have been developed for English text, and there is a need for evaluating the feasibility of adapting these methods to other languages. A Swedish adaption of the English rule-based negation detection system NegEx, which detects negations through the use of trigger phrases, was therefore evaluated. RESULTS: The Swedish adaption of NegEx showed a precision of 75.2% and a recall of 81.9%, when evaluated on 558 manually classified sentences containing negation triggers, and a negative predictive value of 96.5% when evaluated on 342 sentences not containing negation triggers. CONCLUSIONS: The precision was significantly lower for the Swedish adaptation than published results for the English version, but since many negated propositions were identified through a limited set of trigger phrases, it could nevertheless be concluded that the same trigger phrase approach is possible in a Swedish context, even though it needs to be further developed. AVAILABILITY: The triggers used for the evaluation of the Swedish adaption of NegEx are available at http://people.dsv.su.se/~mariask/resources/triggers.txt and can be used together with the original NegEx program for negation detection in Swedish clinical text.
format Online
Article
Text
id pubmed-3194175
institution National Center for Biotechnology Information
language English
publishDate 2011
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-31941752011-10-17 Negation detection in Swedish clinical text: An adaption of NegEx to Swedish Skeppstedt, Maria J Biomed Semantics Proceedings BACKGROUND: Most methods for negation detection in clinical text have been developed for English text, and there is a need for evaluating the feasibility of adapting these methods to other languages. A Swedish adaption of the English rule-based negation detection system NegEx, which detects negations through the use of trigger phrases, was therefore evaluated. RESULTS: The Swedish adaption of NegEx showed a precision of 75.2% and a recall of 81.9%, when evaluated on 558 manually classified sentences containing negation triggers, and a negative predictive value of 96.5% when evaluated on 342 sentences not containing negation triggers. CONCLUSIONS: The precision was significantly lower for the Swedish adaptation than published results for the English version, but since many negated propositions were identified through a limited set of trigger phrases, it could nevertheless be concluded that the same trigger phrase approach is possible in a Swedish context, even though it needs to be further developed. AVAILABILITY: The triggers used for the evaluation of the Swedish adaption of NegEx are available at http://people.dsv.su.se/~mariask/resources/triggers.txt and can be used together with the original NegEx program for negation detection in Swedish clinical text. BioMed Central 2011-07-14 /pmc/articles/PMC3194175/ /pubmed/21992616 http://dx.doi.org/10.1186/2041-1480-2-S3-S3 Text en Copyright ©2011 Skeppstedt; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Proceedings
Skeppstedt, Maria
Negation detection in Swedish clinical text: An adaption of NegEx to Swedish
title Negation detection in Swedish clinical text: An adaption of NegEx to Swedish
title_full Negation detection in Swedish clinical text: An adaption of NegEx to Swedish
title_fullStr Negation detection in Swedish clinical text: An adaption of NegEx to Swedish
title_full_unstemmed Negation detection in Swedish clinical text: An adaption of NegEx to Swedish
title_short Negation detection in Swedish clinical text: An adaption of NegEx to Swedish
title_sort negation detection in swedish clinical text: an adaption of negex to swedish
topic Proceedings
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194175/
https://www.ncbi.nlm.nih.gov/pubmed/21992616
http://dx.doi.org/10.1186/2041-1480-2-S3-S3
work_keys_str_mv AT skeppstedtmaria negationdetectioninswedishclinicaltextanadaptionofnegextoswedish