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Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition

Bacillus strains with >99.7% 16S rRNA gene sequence similarity were characterized with DNA:DNA hybridization, cellular fatty acid (CFA) analysis, and testing of 100 phenotypic traits. When paired with the most closely related type strain, percent DNA:DNA similarities (% S) for six Bacillus strain...

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Autores principales: Peak, K. Kealy, Duncan, Kathleen E., Luna, Vicki A., King, Debra S., McCarthy, Peter J., Cannons, Andrew C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3199179/
https://www.ncbi.nlm.nih.gov/pubmed/22046187
http://dx.doi.org/10.1155/2011/673136
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author Peak, K. Kealy
Duncan, Kathleen E.
Luna, Vicki A.
King, Debra S.
McCarthy, Peter J.
Cannons, Andrew C.
author_facet Peak, K. Kealy
Duncan, Kathleen E.
Luna, Vicki A.
King, Debra S.
McCarthy, Peter J.
Cannons, Andrew C.
author_sort Peak, K. Kealy
collection PubMed
description Bacillus strains with >99.7% 16S rRNA gene sequence similarity were characterized with DNA:DNA hybridization, cellular fatty acid (CFA) analysis, and testing of 100 phenotypic traits. When paired with the most closely related type strain, percent DNA:DNA similarities (% S) for six Bacillus strains were all far below the recommended 70% threshold value for species circumscription with Bacillus nealsonii. An apparent genomic group of four Bacillus strain pairings with 94%–70% S was contradicted by the failure of the strains to cluster in CFA- and phenotype-based dendrograms as well as by their differentiation with 9–13 species level discriminators such as nitrate reduction, temperature range, and acid production from carbohydrates. The novel Bacillus strains were monophyletic and very closely related based on 16S rRNA gene sequence. Coherent genomic groups were not however supported by similarly organized phenotypic clusters. Therefore, the strains were not effectively circumscribed within the taxonomic species definition.
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spelling pubmed-31991792011-11-01 Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition Peak, K. Kealy Duncan, Kathleen E. Luna, Vicki A. King, Debra S. McCarthy, Peter J. Cannons, Andrew C. Int J Microbiol Research Article Bacillus strains with >99.7% 16S rRNA gene sequence similarity were characterized with DNA:DNA hybridization, cellular fatty acid (CFA) analysis, and testing of 100 phenotypic traits. When paired with the most closely related type strain, percent DNA:DNA similarities (% S) for six Bacillus strains were all far below the recommended 70% threshold value for species circumscription with Bacillus nealsonii. An apparent genomic group of four Bacillus strain pairings with 94%–70% S was contradicted by the failure of the strains to cluster in CFA- and phenotype-based dendrograms as well as by their differentiation with 9–13 species level discriminators such as nitrate reduction, temperature range, and acid production from carbohydrates. The novel Bacillus strains were monophyletic and very closely related based on 16S rRNA gene sequence. Coherent genomic groups were not however supported by similarly organized phenotypic clusters. Therefore, the strains were not effectively circumscribed within the taxonomic species definition. Hindawi Publishing Corporation 2011 2011-10-20 /pmc/articles/PMC3199179/ /pubmed/22046187 http://dx.doi.org/10.1155/2011/673136 Text en Copyright © 2011 K. Kealy Peak et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Peak, K. Kealy
Duncan, Kathleen E.
Luna, Vicki A.
King, Debra S.
McCarthy, Peter J.
Cannons, Andrew C.
Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title_full Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title_fullStr Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title_full_unstemmed Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title_short Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title_sort bacillus strains most closely related to bacillus nealsonii are not effectively circumscribed within the taxonomic species definition
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3199179/
https://www.ncbi.nlm.nih.gov/pubmed/22046187
http://dx.doi.org/10.1155/2011/673136
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