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Second Order Dimensionality Reduction Using Minimum and Maximum Mutual Information Models

Conventional methods used to characterize multidimensional neural feature selectivity, such as spike-triggered covariance (STC) or maximally informative dimensions (MID), are limited to Gaussian stimuli or are only able to identify a small number of features due to the curse of dimensionality. To ov...

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Detalles Bibliográficos
Autores principales: Fitzgerald, Jeffrey D., Rowekamp, Ryan J., Sincich, Lawrence C., Sharpee, Tatyana O.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3203063/
https://www.ncbi.nlm.nih.gov/pubmed/22046122
http://dx.doi.org/10.1371/journal.pcbi.1002249
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author Fitzgerald, Jeffrey D.
Rowekamp, Ryan J.
Sincich, Lawrence C.
Sharpee, Tatyana O.
author_facet Fitzgerald, Jeffrey D.
Rowekamp, Ryan J.
Sincich, Lawrence C.
Sharpee, Tatyana O.
author_sort Fitzgerald, Jeffrey D.
collection PubMed
description Conventional methods used to characterize multidimensional neural feature selectivity, such as spike-triggered covariance (STC) or maximally informative dimensions (MID), are limited to Gaussian stimuli or are only able to identify a small number of features due to the curse of dimensionality. To overcome these issues, we propose two new dimensionality reduction methods that use minimum and maximum information models. These methods are information theoretic extensions of STC that can be used with non-Gaussian stimulus distributions to find relevant linear subspaces of arbitrary dimensionality. We compare these new methods to the conventional methods in two ways: with biologically-inspired simulated neurons responding to natural images and with recordings from macaque retinal and thalamic cells responding to naturalistic time-varying stimuli. With non-Gaussian stimuli, the minimum and maximum information methods significantly outperform STC in all cases, whereas MID performs best in the regime of low dimensional feature spaces.
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spelling pubmed-32030632011-11-01 Second Order Dimensionality Reduction Using Minimum and Maximum Mutual Information Models Fitzgerald, Jeffrey D. Rowekamp, Ryan J. Sincich, Lawrence C. Sharpee, Tatyana O. PLoS Comput Biol Research Article Conventional methods used to characterize multidimensional neural feature selectivity, such as spike-triggered covariance (STC) or maximally informative dimensions (MID), are limited to Gaussian stimuli or are only able to identify a small number of features due to the curse of dimensionality. To overcome these issues, we propose two new dimensionality reduction methods that use minimum and maximum information models. These methods are information theoretic extensions of STC that can be used with non-Gaussian stimulus distributions to find relevant linear subspaces of arbitrary dimensionality. We compare these new methods to the conventional methods in two ways: with biologically-inspired simulated neurons responding to natural images and with recordings from macaque retinal and thalamic cells responding to naturalistic time-varying stimuli. With non-Gaussian stimuli, the minimum and maximum information methods significantly outperform STC in all cases, whereas MID performs best in the regime of low dimensional feature spaces. Public Library of Science 2011-10-27 /pmc/articles/PMC3203063/ /pubmed/22046122 http://dx.doi.org/10.1371/journal.pcbi.1002249 Text en Fitzgerald et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Fitzgerald, Jeffrey D.
Rowekamp, Ryan J.
Sincich, Lawrence C.
Sharpee, Tatyana O.
Second Order Dimensionality Reduction Using Minimum and Maximum Mutual Information Models
title Second Order Dimensionality Reduction Using Minimum and Maximum Mutual Information Models
title_full Second Order Dimensionality Reduction Using Minimum and Maximum Mutual Information Models
title_fullStr Second Order Dimensionality Reduction Using Minimum and Maximum Mutual Information Models
title_full_unstemmed Second Order Dimensionality Reduction Using Minimum and Maximum Mutual Information Models
title_short Second Order Dimensionality Reduction Using Minimum and Maximum Mutual Information Models
title_sort second order dimensionality reduction using minimum and maximum mutual information models
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3203063/
https://www.ncbi.nlm.nih.gov/pubmed/22046122
http://dx.doi.org/10.1371/journal.pcbi.1002249
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