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An integrated systems biology approach to the study of preterm birth using "-omic" technology - a guideline for research

Preterm birth is the leading cause of neonatal mortality and perinatal morbidity. The etiology of preterm is multi-factorial and still unclear. As evidence increases for a genetic contribution to PTB, so does the need to explore genomics, transcriptomics, proteomics and metabolomics in its study. Th...

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Autores principales: Gracie, Sara, Pennell, Craig, Ekman-Ordeberg, Gunvor, Lye, Stephen, McManaman, James, Williams, Scott, Palmer, Lyle, Kelley, Maureen, Menon, Ram, Gravett, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3205030/
https://www.ncbi.nlm.nih.gov/pubmed/21992798
http://dx.doi.org/10.1186/1471-2393-11-71
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author Gracie, Sara
Pennell, Craig
Ekman-Ordeberg, Gunvor
Lye, Stephen
McManaman, James
Williams, Scott
Palmer, Lyle
Kelley, Maureen
Menon, Ram
Gravett, Michael
author_facet Gracie, Sara
Pennell, Craig
Ekman-Ordeberg, Gunvor
Lye, Stephen
McManaman, James
Williams, Scott
Palmer, Lyle
Kelley, Maureen
Menon, Ram
Gravett, Michael
author_sort Gracie, Sara
collection PubMed
description Preterm birth is the leading cause of neonatal mortality and perinatal morbidity. The etiology of preterm is multi-factorial and still unclear. As evidence increases for a genetic contribution to PTB, so does the need to explore genomics, transcriptomics, proteomics and metabolomics in its study. This review suggests research guidelines for the conduct of high throughput systems biology investigations into preterm birth with the expectation that this will facilitate the sharing of samples and data internationally through consortia, generating the power needed to study preterm birth using integrated "-omics" technologies. The issues to be addressed include: (1) integrated "-omics" approaches, (2) phenotyping, (3) sample collection, (4) data management-integrative databases, (5) international consortia and (6) translational feasibility. This manuscript is the product of discussions initiated by the "-Omics" Working Group at the Preterm Birth International Collaborative Meeting held at the World Health Organization, Geneva, Switzerland in April 2009.
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spelling pubmed-32050302011-11-01 An integrated systems biology approach to the study of preterm birth using "-omic" technology - a guideline for research Gracie, Sara Pennell, Craig Ekman-Ordeberg, Gunvor Lye, Stephen McManaman, James Williams, Scott Palmer, Lyle Kelley, Maureen Menon, Ram Gravett, Michael BMC Pregnancy Childbirth Correspondence Preterm birth is the leading cause of neonatal mortality and perinatal morbidity. The etiology of preterm is multi-factorial and still unclear. As evidence increases for a genetic contribution to PTB, so does the need to explore genomics, transcriptomics, proteomics and metabolomics in its study. This review suggests research guidelines for the conduct of high throughput systems biology investigations into preterm birth with the expectation that this will facilitate the sharing of samples and data internationally through consortia, generating the power needed to study preterm birth using integrated "-omics" technologies. The issues to be addressed include: (1) integrated "-omics" approaches, (2) phenotyping, (3) sample collection, (4) data management-integrative databases, (5) international consortia and (6) translational feasibility. This manuscript is the product of discussions initiated by the "-Omics" Working Group at the Preterm Birth International Collaborative Meeting held at the World Health Organization, Geneva, Switzerland in April 2009. BioMed Central 2011-10-12 /pmc/articles/PMC3205030/ /pubmed/21992798 http://dx.doi.org/10.1186/1471-2393-11-71 Text en Copyright ©2011 Gracie et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Correspondence
Gracie, Sara
Pennell, Craig
Ekman-Ordeberg, Gunvor
Lye, Stephen
McManaman, James
Williams, Scott
Palmer, Lyle
Kelley, Maureen
Menon, Ram
Gravett, Michael
An integrated systems biology approach to the study of preterm birth using "-omic" technology - a guideline for research
title An integrated systems biology approach to the study of preterm birth using "-omic" technology - a guideline for research
title_full An integrated systems biology approach to the study of preterm birth using "-omic" technology - a guideline for research
title_fullStr An integrated systems biology approach to the study of preterm birth using "-omic" technology - a guideline for research
title_full_unstemmed An integrated systems biology approach to the study of preterm birth using "-omic" technology - a guideline for research
title_short An integrated systems biology approach to the study of preterm birth using "-omic" technology - a guideline for research
title_sort integrated systems biology approach to the study of preterm birth using "-omic" technology - a guideline for research
topic Correspondence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3205030/
https://www.ncbi.nlm.nih.gov/pubmed/21992798
http://dx.doi.org/10.1186/1471-2393-11-71
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