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Ami - The chemist's amanuensis

The Ami project was a six month Rapid Innovation project sponsored by JISC to explore the Virtual Research Environment space. The project brainstormed with chemists and decided to investigate ways to facilitate monitoring and collection of experimental data. A frequently encountered use-case was ide...

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Autores principales: Brooks, Brian J, Thorn, Adam L, Smith, Matthew, Matthews, Peter, Chen, Shaoming, O'Steen, Ben, Adams, Sam E, Townsend, Joe A, Murray-Rust, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3206454/
https://www.ncbi.nlm.nih.gov/pubmed/21999587
http://dx.doi.org/10.1186/1758-2946-3-45
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author Brooks, Brian J
Thorn, Adam L
Smith, Matthew
Matthews, Peter
Chen, Shaoming
O'Steen, Ben
Adams, Sam E
Townsend, Joe A
Murray-Rust, Peter
author_facet Brooks, Brian J
Thorn, Adam L
Smith, Matthew
Matthews, Peter
Chen, Shaoming
O'Steen, Ben
Adams, Sam E
Townsend, Joe A
Murray-Rust, Peter
author_sort Brooks, Brian J
collection PubMed
description The Ami project was a six month Rapid Innovation project sponsored by JISC to explore the Virtual Research Environment space. The project brainstormed with chemists and decided to investigate ways to facilitate monitoring and collection of experimental data. A frequently encountered use-case was identified of how the chemist reaches the end of an experiment, but finds an unexpected result. The ability to replay events can significantly help make sense of how things progressed. The project therefore concentrated on collecting a variety of dimensions of ancillary data - data that would not normally be collected due to practicality constraints. There were three main areas of investigation: 1) Development of a monitoring tool using infrared and ultrasonic sensors; 2) Time-lapse motion video capture (for example, videoing 5 seconds in every 60); and 3) Activity-driven video monitoring of the fume cupboard environs. The Ami client application was developed to control these separate logging functions. The application builds up a timeline of the events in the experiment and around the fume cupboard. The videos and data logs can then be reviewed after the experiment in order to help the chemist determine the exact timings and conditions used. The project experimented with ways in which a Microsoft Kinect could be used in a laboratory setting. Investigations suggest that it would not be an ideal device for controlling a mouse, but it shows promise for usages such as manipulating virtual molecules.
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spelling pubmed-32064542011-11-03 Ami - The chemist's amanuensis Brooks, Brian J Thorn, Adam L Smith, Matthew Matthews, Peter Chen, Shaoming O'Steen, Ben Adams, Sam E Townsend, Joe A Murray-Rust, Peter J Cheminform Research Article The Ami project was a six month Rapid Innovation project sponsored by JISC to explore the Virtual Research Environment space. The project brainstormed with chemists and decided to investigate ways to facilitate monitoring and collection of experimental data. A frequently encountered use-case was identified of how the chemist reaches the end of an experiment, but finds an unexpected result. The ability to replay events can significantly help make sense of how things progressed. The project therefore concentrated on collecting a variety of dimensions of ancillary data - data that would not normally be collected due to practicality constraints. There were three main areas of investigation: 1) Development of a monitoring tool using infrared and ultrasonic sensors; 2) Time-lapse motion video capture (for example, videoing 5 seconds in every 60); and 3) Activity-driven video monitoring of the fume cupboard environs. The Ami client application was developed to control these separate logging functions. The application builds up a timeline of the events in the experiment and around the fume cupboard. The videos and data logs can then be reviewed after the experiment in order to help the chemist determine the exact timings and conditions used. The project experimented with ways in which a Microsoft Kinect could be used in a laboratory setting. Investigations suggest that it would not be an ideal device for controlling a mouse, but it shows promise for usages such as manipulating virtual molecules. BioMed Central 2011-10-14 /pmc/articles/PMC3206454/ /pubmed/21999587 http://dx.doi.org/10.1186/1758-2946-3-45 Text en Copyright ©2011 Brooks et al; licensee Chemistry Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Brooks, Brian J
Thorn, Adam L
Smith, Matthew
Matthews, Peter
Chen, Shaoming
O'Steen, Ben
Adams, Sam E
Townsend, Joe A
Murray-Rust, Peter
Ami - The chemist's amanuensis
title Ami - The chemist's amanuensis
title_full Ami - The chemist's amanuensis
title_fullStr Ami - The chemist's amanuensis
title_full_unstemmed Ami - The chemist's amanuensis
title_short Ami - The chemist's amanuensis
title_sort ami - the chemist's amanuensis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3206454/
https://www.ncbi.nlm.nih.gov/pubmed/21999587
http://dx.doi.org/10.1186/1758-2946-3-45
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