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Finding and Testing Network Communities by Lumped Markov Chains
Identifying communities (or clusters), namely groups of nodes with comparatively strong internal connectivity, is a fundamental task for deeply understanding the structure and function of a network. Yet, there is a lack of formal criteria for defining communities and for testing their significance....
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2011
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207820/ https://www.ncbi.nlm.nih.gov/pubmed/22073245 http://dx.doi.org/10.1371/journal.pone.0027028 |
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author | Piccardi, Carlo |
author_facet | Piccardi, Carlo |
author_sort | Piccardi, Carlo |
collection | PubMed |
description | Identifying communities (or clusters), namely groups of nodes with comparatively strong internal connectivity, is a fundamental task for deeply understanding the structure and function of a network. Yet, there is a lack of formal criteria for defining communities and for testing their significance. We propose a sharp definition that is based on a quality threshold. By means of a lumped Markov chain model of a random walker, a quality measure called “persistence probability” is associated to a cluster, which is then defined as an “[Image: see text]-community” if such a probability is not smaller than [Image: see text]. Consistently, a partition composed of [Image: see text]-communities is an “[Image: see text]-partition.” These definitions turn out to be very effective for finding and testing communities. If a set of candidate partitions is available, setting the desired [Image: see text]-level allows one to immediately select the [Image: see text]-partition with the finest decomposition. Simultaneously, the persistence probabilities quantify the quality of each single community. Given its ability in individually assessing each single cluster, this approach can also disclose single well-defined communities even in networks that overall do not possess a definite clusterized structure. |
format | Online Article Text |
id | pubmed-3207820 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-32078202011-11-09 Finding and Testing Network Communities by Lumped Markov Chains Piccardi, Carlo PLoS One Research Article Identifying communities (or clusters), namely groups of nodes with comparatively strong internal connectivity, is a fundamental task for deeply understanding the structure and function of a network. Yet, there is a lack of formal criteria for defining communities and for testing their significance. We propose a sharp definition that is based on a quality threshold. By means of a lumped Markov chain model of a random walker, a quality measure called “persistence probability” is associated to a cluster, which is then defined as an “[Image: see text]-community” if such a probability is not smaller than [Image: see text]. Consistently, a partition composed of [Image: see text]-communities is an “[Image: see text]-partition.” These definitions turn out to be very effective for finding and testing communities. If a set of candidate partitions is available, setting the desired [Image: see text]-level allows one to immediately select the [Image: see text]-partition with the finest decomposition. Simultaneously, the persistence probabilities quantify the quality of each single community. Given its ability in individually assessing each single cluster, this approach can also disclose single well-defined communities even in networks that overall do not possess a definite clusterized structure. Public Library of Science 2011-11-03 /pmc/articles/PMC3207820/ /pubmed/22073245 http://dx.doi.org/10.1371/journal.pone.0027028 Text en Carlo Piccardi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Piccardi, Carlo Finding and Testing Network Communities by Lumped Markov Chains |
title | Finding and Testing Network Communities by Lumped Markov Chains |
title_full | Finding and Testing Network Communities by Lumped Markov Chains |
title_fullStr | Finding and Testing Network Communities by Lumped Markov Chains |
title_full_unstemmed | Finding and Testing Network Communities by Lumped Markov Chains |
title_short | Finding and Testing Network Communities by Lumped Markov Chains |
title_sort | finding and testing network communities by lumped markov chains |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207820/ https://www.ncbi.nlm.nih.gov/pubmed/22073245 http://dx.doi.org/10.1371/journal.pone.0027028 |
work_keys_str_mv | AT piccardicarlo findingandtestingnetworkcommunitiesbylumpedmarkovchains |