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Finding and Testing Network Communities by Lumped Markov Chains

Identifying communities (or clusters), namely groups of nodes with comparatively strong internal connectivity, is a fundamental task for deeply understanding the structure and function of a network. Yet, there is a lack of formal criteria for defining communities and for testing their significance....

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Detalles Bibliográficos
Autor principal: Piccardi, Carlo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207820/
https://www.ncbi.nlm.nih.gov/pubmed/22073245
http://dx.doi.org/10.1371/journal.pone.0027028
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author Piccardi, Carlo
author_facet Piccardi, Carlo
author_sort Piccardi, Carlo
collection PubMed
description Identifying communities (or clusters), namely groups of nodes with comparatively strong internal connectivity, is a fundamental task for deeply understanding the structure and function of a network. Yet, there is a lack of formal criteria for defining communities and for testing their significance. We propose a sharp definition that is based on a quality threshold. By means of a lumped Markov chain model of a random walker, a quality measure called “persistence probability” is associated to a cluster, which is then defined as an “[Image: see text]-community” if such a probability is not smaller than [Image: see text]. Consistently, a partition composed of [Image: see text]-communities is an “[Image: see text]-partition.” These definitions turn out to be very effective for finding and testing communities. If a set of candidate partitions is available, setting the desired [Image: see text]-level allows one to immediately select the [Image: see text]-partition with the finest decomposition. Simultaneously, the persistence probabilities quantify the quality of each single community. Given its ability in individually assessing each single cluster, this approach can also disclose single well-defined communities even in networks that overall do not possess a definite clusterized structure.
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spelling pubmed-32078202011-11-09 Finding and Testing Network Communities by Lumped Markov Chains Piccardi, Carlo PLoS One Research Article Identifying communities (or clusters), namely groups of nodes with comparatively strong internal connectivity, is a fundamental task for deeply understanding the structure and function of a network. Yet, there is a lack of formal criteria for defining communities and for testing their significance. We propose a sharp definition that is based on a quality threshold. By means of a lumped Markov chain model of a random walker, a quality measure called “persistence probability” is associated to a cluster, which is then defined as an “[Image: see text]-community” if such a probability is not smaller than [Image: see text]. Consistently, a partition composed of [Image: see text]-communities is an “[Image: see text]-partition.” These definitions turn out to be very effective for finding and testing communities. If a set of candidate partitions is available, setting the desired [Image: see text]-level allows one to immediately select the [Image: see text]-partition with the finest decomposition. Simultaneously, the persistence probabilities quantify the quality of each single community. Given its ability in individually assessing each single cluster, this approach can also disclose single well-defined communities even in networks that overall do not possess a definite clusterized structure. Public Library of Science 2011-11-03 /pmc/articles/PMC3207820/ /pubmed/22073245 http://dx.doi.org/10.1371/journal.pone.0027028 Text en Carlo Piccardi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Piccardi, Carlo
Finding and Testing Network Communities by Lumped Markov Chains
title Finding and Testing Network Communities by Lumped Markov Chains
title_full Finding and Testing Network Communities by Lumped Markov Chains
title_fullStr Finding and Testing Network Communities by Lumped Markov Chains
title_full_unstemmed Finding and Testing Network Communities by Lumped Markov Chains
title_short Finding and Testing Network Communities by Lumped Markov Chains
title_sort finding and testing network communities by lumped markov chains
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207820/
https://www.ncbi.nlm.nih.gov/pubmed/22073245
http://dx.doi.org/10.1371/journal.pone.0027028
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