Cargando…

ClubSub-P: Cluster-Based Subcellular Localization Prediction for Gram-Negative Bacteria and Archaea

The subcellular localization (SCL) of proteins provides important clues to their function in a cell. In our efforts to predict useful vaccine targets against Gram-negative bacteria, we noticed that misannotated start codons frequently lead to wrongly assigned SCLs. This and other problems in SCL pre...

Descripción completa

Detalles Bibliográficos
Autores principales:	Paramasivam, Nagarajan, Linke, Dirk
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Research Foundation 2011
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3210502/ https://www.ncbi.nlm.nih.gov/pubmed/22073040 http://dx.doi.org/10.3389/fmicb.2011.00218

Ejemplares similares

Is the C-terminal insertional signal in Gram-negative bacterial outer membrane proteins species-specific or not?
por: Paramasivam, Nagarajan, et al.
Publicado: (2012)

Secretion Systems in Gram-Negative Bacterial Fish Pathogens
por: Mekasha, Sophanit, et al.
Publicado: (2021)

Determining the Targets of Fluopsin C Action on Gram-Negative and Gram-Positive Bacteria
por: Navarro, Miguel Octavio Pérez, et al.
Publicado: (2020)

Desiccation- and Saline-Tolerant Bacteria and Archaea in Kalahari Pan Sediments
por: Genderjahn, Steffi, et al.
Publicado: (2018)

NADPH-generating systems in bacteria and archaea
por: Spaans, Sebastiaan K., et al.
Publicado: (2015)

PSORTdb—an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea
por: Yu, Nancy Y., et al.
Publicado: (2011)

Bacteriocins to Thwart Bacterial Resistance in Gram Negative Bacteria
por: Telhig, Soufiane, et al.
Publicado: (2020)

Flow cytometric evaluation of physico-chemical impact on Gram-positive and Gram-negative bacteria
por: Fröhling, Antje, et al.
Publicado: (2015)

Corrigendum: Determining the Targets of Fluopsin C Action on Gram-Negative and Gram-Positive Bacteria
por: Navarro, Miguel Octavio Pérez, et al.
Publicado: (2020)

SOSUI-GramN: high performance prediction for sub-cellular localization of proteins in Gram-negative bacteria
por: Imai, Kenichiro, et al.
Publicado: (2008)

Multiple Responses of Gram-Positive and Gram-Negative Bacteria to Mixture of Hydrocarbons
por: Marilena Lăzăroaie, Mihaela
Publicado: (2010)

Editorial: Symbioses Between Protists and Bacteria/Archaea
por: Kostygov, Alexei Yu., et al.
Publicado: (2021)

Editorial: CRISPR-Cas Systems in Bacteria and Archaea
por: Kamruzzaman, Muhammad, et al.
Publicado: (2022)

Archaea and their interactions with bacteria in a karst ecosystem
por: Cheng, Xiaoyu, et al.
Publicado: (2023)

Sub-MICs of Mentha piperita essential oil and menthol inhibits AHL mediated quorum sensing and biofilm of Gram-negative bacteria
por: Husain, Fohad M., et al.
Publicado: (2015)

Multiparametric Profiling for Identification of Chemosensitizers against Gram-Negative Bacteria
por: Lôme, Vincent, et al.
Publicado: (2018)

Bacteriocins Targeting Gram-Negative Phytopathogenic Bacteria: Plantibiotics of the Future
por: Rooney, William M., et al.
Publicado: (2020)

Outer Membrane Vesicles of Gram-Negative Bacteria: An Outlook on Biogenesis
por: Avila-Calderón, Eric Daniel, et al.
Publicado: (2021)

Gram-positive and gram-negative subcellular localization using rotation forest and physicochemical-based features
por: Dehzangi, Abdollah, et al.
Publicado: (2015)

Effect of chemical modifications of tannins on their antimicrobial and antibiofilm effect against Gram-negative and Gram-positive bacteria
por: Villanueva, Xabier, et al.
Publicado: (2023)

Nano-Sized and Filterable Bacteria and Archaea: Biodiversity and Function
por: Ghuneim, Lydia-Ann J., et al.
Publicado: (2018)

Type IVB Secretion Systems of Legionella and Other Gram-Negative Bacteria
por: Nagai, Hiroki, et al.
Publicado: (2011)

Beta-lactamase induction and cell wall metabolism in Gram-negative bacteria
por: Zeng, Ximin, et al.
Publicado: (2013)

Antibiotic Susceptibility Testing of the Gram-Negative Bacteria Based on Flow Cytometry
por: Saint-Ruf, Claude, et al.
Publicado: (2016)

Tools and Approaches for Dissecting Protein Bacteriocin Import in Gram-Negative Bacteria
por: Atanaskovic, Iva, et al.
Publicado: (2019)

Bacteriophages Infecting Gram-Negative Bacteria in a Commercial Cucumber Fermentation
por: Lu, Zhongjing, et al.
Publicado: (2020)

Editorial: The Prevalence of MDR Non-Fermenting Gram Negative Bacteria and Their Chemotherapy
por: Chen, Moutong, et al.
Publicado: (2021)

Ab initio Designed Antimicrobial Peptides Against Gram-Negative Bacteria
por: Bobde, Shravani S., et al.
Publicado: (2021)

Drug development concerning metallo-β-lactamases in gram-negative bacteria
por: Li, Xiuyun, et al.
Publicado: (2022)

Antibacterial Activity of Stenotrophomonas maltophilia Endolysin P28 against both Gram-positive and Gram-negative Bacteria
por: Dong, Hongling, et al.
Publicado: (2015)

Occurrence of ferredoxin:NAD(+) oxidoreductase activity and its ion specificity in several Gram-positive and Gram-negative bacteria
por: Hess, Verena, et al.
Publicado: (2016)

Gastrointestinal Stability and Cytotoxicity of Bacteriocins From Gram-Positive and Gram-Negative Bacteria: A Comparative in vitro Study
por: Soltani, Samira, et al.
Publicado: (2022)

PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures
por: Peabody, Michael A., et al.
Publicado: (2016)

Genome-wide gene order distances support clustering the gram-positive bacteria
por: House, Christopher H., et al.
Publicado: (2015)

A review of ammonia-oxidizing bacteria and archaea in Chinese soils
por: Shen, Ju-Pei, et al.
Publicado: (2012)

Mrp Antiporters Have Important Roles in Diverse Bacteria and Archaea
por: Ito, Masahiro, et al.
Publicado: (2017)

Viruses and Their Interactions With Bacteria and Archaea of Hypersaline Great Salt Lake
por: Bhattarai, Bishav, et al.
Publicado: (2021)

Single-cell scattering and auto-fluorescence-based fast antibiotic susceptibility testing for gram-negative and gram-positive bacteria
por: Dixneuf, Sophie, et al.
Publicado: (2023)

Outer Membrane Vesicles (OMVs) of Gram-negative Bacteria: A Perspective Update
por: Jan, Arif Tasleem
Publicado: (2017)

Molecular Surveillance of Carbapenem-Resistant Gram-Negative Bacteria in Liver Transplant Candidates
por: Schultze, Tilman G., et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_29hebpith6clj7tq70hgfaf0hb