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A multi-dataset data-collection strategy produces better diffraction data
A multi-dataset (MDS) data-collection strategy is proposed and analyzed for macromolecular crystal diffraction data acquisition. The theoretical analysis indicated that the MDS strategy can reduce the standard deviation (background noise) of diffraction data compared with the commonly used single-da...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3211246/ https://www.ncbi.nlm.nih.gov/pubmed/22011470 http://dx.doi.org/10.1107/S0108767311037469 |
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author | Liu, Zhi-Jie Chen, Lirong Wu, Dong Ding, Wei Zhang, Hua Zhou, Weihong Fu, Zheng-Qing Wang, Bi-Cheng |
author_facet | Liu, Zhi-Jie Chen, Lirong Wu, Dong Ding, Wei Zhang, Hua Zhou, Weihong Fu, Zheng-Qing Wang, Bi-Cheng |
author_sort | Liu, Zhi-Jie |
collection | PubMed |
description | A multi-dataset (MDS) data-collection strategy is proposed and analyzed for macromolecular crystal diffraction data acquisition. The theoretical analysis indicated that the MDS strategy can reduce the standard deviation (background noise) of diffraction data compared with the commonly used single-dataset strategy for a fixed X-ray dose. In order to validate the hypothesis experimentally, a data-quality evaluation process, termed a readiness test of the X-ray data-collection system, was developed. The anomalous signals of sulfur atoms in zinc-free insulin crystals were used as the probe to differentiate the quality of data collected using different data-collection strategies. The data-collection results using home-laboratory-based rotating-anode X-ray and synchrotron X-ray systems indicate that the diffraction data collected with the MDS strategy contain more accurate anomalous signals from sulfur atoms than the data collected with a regular data-collection strategy. In addition, the MDS strategy offered more advantages with respect to radiation-damage-sensitive crystals and better usage of rotating-anode as well as synchrotron X-rays. |
format | Online Article Text |
id | pubmed-3211246 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-32112462011-11-10 A multi-dataset data-collection strategy produces better diffraction data Liu, Zhi-Jie Chen, Lirong Wu, Dong Ding, Wei Zhang, Hua Zhou, Weihong Fu, Zheng-Qing Wang, Bi-Cheng Acta Crystallogr A Research Papers A multi-dataset (MDS) data-collection strategy is proposed and analyzed for macromolecular crystal diffraction data acquisition. The theoretical analysis indicated that the MDS strategy can reduce the standard deviation (background noise) of diffraction data compared with the commonly used single-dataset strategy for a fixed X-ray dose. In order to validate the hypothesis experimentally, a data-quality evaluation process, termed a readiness test of the X-ray data-collection system, was developed. The anomalous signals of sulfur atoms in zinc-free insulin crystals were used as the probe to differentiate the quality of data collected using different data-collection strategies. The data-collection results using home-laboratory-based rotating-anode X-ray and synchrotron X-ray systems indicate that the diffraction data collected with the MDS strategy contain more accurate anomalous signals from sulfur atoms than the data collected with a regular data-collection strategy. In addition, the MDS strategy offered more advantages with respect to radiation-damage-sensitive crystals and better usage of rotating-anode as well as synchrotron X-rays. International Union of Crystallography 2011-11-01 2011-10-18 /pmc/articles/PMC3211246/ /pubmed/22011470 http://dx.doi.org/10.1107/S0108767311037469 Text en © Zhi-Jie Liu et al. 2011 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Liu, Zhi-Jie Chen, Lirong Wu, Dong Ding, Wei Zhang, Hua Zhou, Weihong Fu, Zheng-Qing Wang, Bi-Cheng A multi-dataset data-collection strategy produces better diffraction data |
title | A multi-dataset data-collection strategy produces better diffraction data |
title_full | A multi-dataset data-collection strategy produces better diffraction data |
title_fullStr | A multi-dataset data-collection strategy produces better diffraction data |
title_full_unstemmed | A multi-dataset data-collection strategy produces better diffraction data |
title_short | A multi-dataset data-collection strategy produces better diffraction data |
title_sort | multi-dataset data-collection strategy produces better diffraction data |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3211246/ https://www.ncbi.nlm.nih.gov/pubmed/22011470 http://dx.doi.org/10.1107/S0108767311037469 |
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