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A multi-dataset data-collection strategy produces better diffraction data

A multi-dataset (MDS) data-collection strategy is proposed and analyzed for macromolecular crystal diffraction data acquisition. The theoretical analysis indicated that the MDS strategy can reduce the standard deviation (background noise) of diffraction data compared with the commonly used single-da...

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Autores principales: Liu, Zhi-Jie, Chen, Lirong, Wu, Dong, Ding, Wei, Zhang, Hua, Zhou, Weihong, Fu, Zheng-Qing, Wang, Bi-Cheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3211246/
https://www.ncbi.nlm.nih.gov/pubmed/22011470
http://dx.doi.org/10.1107/S0108767311037469
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author Liu, Zhi-Jie
Chen, Lirong
Wu, Dong
Ding, Wei
Zhang, Hua
Zhou, Weihong
Fu, Zheng-Qing
Wang, Bi-Cheng
author_facet Liu, Zhi-Jie
Chen, Lirong
Wu, Dong
Ding, Wei
Zhang, Hua
Zhou, Weihong
Fu, Zheng-Qing
Wang, Bi-Cheng
author_sort Liu, Zhi-Jie
collection PubMed
description A multi-dataset (MDS) data-collection strategy is proposed and analyzed for macromolecular crystal diffraction data acquisition. The theoretical analysis indicated that the MDS strategy can reduce the standard deviation (background noise) of diffraction data compared with the commonly used single-dataset strategy for a fixed X-ray dose. In order to validate the hypothesis experimentally, a data-quality evaluation process, termed a readiness test of the X-ray data-collection system, was developed. The anomalous signals of sulfur atoms in zinc-free insulin crystals were used as the probe to differentiate the quality of data collected using different data-collection strategies. The data-collection results using home-laboratory-based rotating-anode X-ray and synchrotron X-ray systems indicate that the diffraction data collected with the MDS strategy contain more accurate anomalous signals from sulfur atoms than the data collected with a regular data-collection strategy. In addition, the MDS strategy offered more advantages with respect to radiation-damage-sensitive crystals and better usage of rotating-anode as well as synchrotron X-rays.
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spelling pubmed-32112462011-11-10 A multi-dataset data-collection strategy produces better diffraction data Liu, Zhi-Jie Chen, Lirong Wu, Dong Ding, Wei Zhang, Hua Zhou, Weihong Fu, Zheng-Qing Wang, Bi-Cheng Acta Crystallogr A Research Papers A multi-dataset (MDS) data-collection strategy is proposed and analyzed for macromolecular crystal diffraction data acquisition. The theoretical analysis indicated that the MDS strategy can reduce the standard deviation (background noise) of diffraction data compared with the commonly used single-dataset strategy for a fixed X-ray dose. In order to validate the hypothesis experimentally, a data-quality evaluation process, termed a readiness test of the X-ray data-collection system, was developed. The anomalous signals of sulfur atoms in zinc-free insulin crystals were used as the probe to differentiate the quality of data collected using different data-collection strategies. The data-collection results using home-laboratory-based rotating-anode X-ray and synchrotron X-ray systems indicate that the diffraction data collected with the MDS strategy contain more accurate anomalous signals from sulfur atoms than the data collected with a regular data-collection strategy. In addition, the MDS strategy offered more advantages with respect to radiation-damage-sensitive crystals and better usage of rotating-anode as well as synchrotron X-rays. International Union of Crystallography 2011-11-01 2011-10-18 /pmc/articles/PMC3211246/ /pubmed/22011470 http://dx.doi.org/10.1107/S0108767311037469 Text en © Zhi-Jie Liu et al. 2011 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Liu, Zhi-Jie
Chen, Lirong
Wu, Dong
Ding, Wei
Zhang, Hua
Zhou, Weihong
Fu, Zheng-Qing
Wang, Bi-Cheng
A multi-dataset data-collection strategy produces better diffraction data
title A multi-dataset data-collection strategy produces better diffraction data
title_full A multi-dataset data-collection strategy produces better diffraction data
title_fullStr A multi-dataset data-collection strategy produces better diffraction data
title_full_unstemmed A multi-dataset data-collection strategy produces better diffraction data
title_short A multi-dataset data-collection strategy produces better diffraction data
title_sort multi-dataset data-collection strategy produces better diffraction data
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3211246/
https://www.ncbi.nlm.nih.gov/pubmed/22011470
http://dx.doi.org/10.1107/S0108767311037469
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