ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data

RNA-Seq and microarray platforms have emerged as important tools for detecting changes in gene expression and RNA processing in biological samples. We present ExpressionPlot, a software package consisting of a default back end, which prepares raw sequencing or Affymetrix microarray data, and a web-b...

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Detalles Bibliográficos
Autores principales: Friedman, Brad A, Maniatis, Tom
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218831/
https://www.ncbi.nlm.nih.gov/pubmed/21797991
http://dx.doi.org/10.1186/gb-2011-12-7-r69
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author Friedman, Brad A
Maniatis, Tom
author_facet Friedman, Brad A
Maniatis, Tom
author_sort Friedman, Brad A
collection PubMed
description RNA-Seq and microarray platforms have emerged as important tools for detecting changes in gene expression and RNA processing in biological samples. We present ExpressionPlot, a software package consisting of a default back end, which prepares raw sequencing or Affymetrix microarray data, and a web-based front end, which offers a biologically centered interface to browse, visualize, and compare different data sets. Download and installation instructions, a user's manual, discussion group, and a prototype are available at http://expressionplot.com/.
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spelling pubmed-32188312011-11-18 ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data Friedman, Brad A Maniatis, Tom Genome Biol Software RNA-Seq and microarray platforms have emerged as important tools for detecting changes in gene expression and RNA processing in biological samples. We present ExpressionPlot, a software package consisting of a default back end, which prepares raw sequencing or Affymetrix microarray data, and a web-based front end, which offers a biologically centered interface to browse, visualize, and compare different data sets. Download and installation instructions, a user's manual, discussion group, and a prototype are available at http://expressionplot.com/. BioMed Central 2011 2011-07-28 /pmc/articles/PMC3218831/ /pubmed/21797991 http://dx.doi.org/10.1186/gb-2011-12-7-r69 Text en Copyright ©2011 Friedman and Maniatis; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Friedman, Brad A
Maniatis, Tom
ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data
title ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data
title_full ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data
title_fullStr ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data
title_full_unstemmed ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data
title_short ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data
title_sort expressionplot: a web-based framework for analysis of rna-seq and microarray gene expression data
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218831/
https://www.ncbi.nlm.nih.gov/pubmed/21797991
http://dx.doi.org/10.1186/gb-2011-12-7-r69
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