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Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test
Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in o...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3222142/ https://www.ncbi.nlm.nih.gov/pubmed/22101543 http://dx.doi.org/10.1107/S0108768111042868 |
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author | Bardwell, David A. Adjiman, Claire S. Arnautova, Yelena A. Bartashevich, Ekaterina Boerrigter, Stephan X. M. Braun, Doris E. Cruz-Cabeza, Aurora J. Day, Graeme M. Della Valle, Raffaele G. Desiraju, Gautam R. van Eijck, Bouke P. Facelli, Julio C. Ferraro, Marta B. Grillo, Damian Habgood, Matthew Hofmann, Detlef W. M. Hofmann, Fridolin Jose, K. V. Jovan Karamertzanis, Panagiotis G. Kazantsev, Andrei V. Kendrick, John Kuleshova, Liudmila N. Leusen, Frank J. J. Maleev, Andrey V. Misquitta, Alston J. Mohamed, Sharmarke Needs, Richard J. Neumann, Marcus A. Nikylov, Denis Orendt, Anita M. Pal, Rumpa Pantelides, Constantinos C. Pickard, Chris J. Price, Louise S. Price, Sarah L. Scheraga, Harold A. van de Streek, Jacco Thakur, Tejender S. Tiwari, Siddharth Venuti, Elisabetta Zhitkov, Ilia K. |
author_facet | Bardwell, David A. Adjiman, Claire S. Arnautova, Yelena A. Bartashevich, Ekaterina Boerrigter, Stephan X. M. Braun, Doris E. Cruz-Cabeza, Aurora J. Day, Graeme M. Della Valle, Raffaele G. Desiraju, Gautam R. van Eijck, Bouke P. Facelli, Julio C. Ferraro, Marta B. Grillo, Damian Habgood, Matthew Hofmann, Detlef W. M. Hofmann, Fridolin Jose, K. V. Jovan Karamertzanis, Panagiotis G. Kazantsev, Andrei V. Kendrick, John Kuleshova, Liudmila N. Leusen, Frank J. J. Maleev, Andrey V. Misquitta, Alston J. Mohamed, Sharmarke Needs, Richard J. Neumann, Marcus A. Nikylov, Denis Orendt, Anita M. Pal, Rumpa Pantelides, Constantinos C. Pickard, Chris J. Price, Louise S. Price, Sarah L. Scheraga, Harold A. van de Streek, Jacco Thakur, Tejender S. Tiwari, Siddharth Venuti, Elisabetta Zhitkov, Ilia K. |
author_sort | Bardwell, David A. |
collection | PubMed |
description | Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in order to evaluate the ability of the current computational methods to predict the crystal structures of the six organic molecules chosen as targets for this blind test. The first four targets, two rigid molecules, one semi-flexible molecule and a 1:1 salt, matched the criteria for the targets from CSP2007, while the last two targets belonged to two new challenging categories – a larger, much more flexible molecule and a hydrate with more than one polymorph. Each group submitted three predictions for each target it attempted. There was at least one successful prediction for each target, and two groups were able to successfully predict the structure of the large flexible molecule as their first place submission. The results show that while not as many groups successfully predicted the structures of the three smallest molecules as in CSP2007, there is now evidence that methodologies such as dispersion-corrected density functional theory (DFT-D) are able to reliably do so. The results also highlight the many challenges posed by more complex systems and show that there are still issues to be overcome. |
format | Online Article Text |
id | pubmed-3222142 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-32221422011-12-01 Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test Bardwell, David A. Adjiman, Claire S. Arnautova, Yelena A. Bartashevich, Ekaterina Boerrigter, Stephan X. M. Braun, Doris E. Cruz-Cabeza, Aurora J. Day, Graeme M. Della Valle, Raffaele G. Desiraju, Gautam R. van Eijck, Bouke P. Facelli, Julio C. Ferraro, Marta B. Grillo, Damian Habgood, Matthew Hofmann, Detlef W. M. Hofmann, Fridolin Jose, K. V. Jovan Karamertzanis, Panagiotis G. Kazantsev, Andrei V. Kendrick, John Kuleshova, Liudmila N. Leusen, Frank J. J. Maleev, Andrey V. Misquitta, Alston J. Mohamed, Sharmarke Needs, Richard J. Neumann, Marcus A. Nikylov, Denis Orendt, Anita M. Pal, Rumpa Pantelides, Constantinos C. Pickard, Chris J. Price, Louise S. Price, Sarah L. Scheraga, Harold A. van de Streek, Jacco Thakur, Tejender S. Tiwari, Siddharth Venuti, Elisabetta Zhitkov, Ilia K. Acta Crystallogr B Research Papers Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in order to evaluate the ability of the current computational methods to predict the crystal structures of the six organic molecules chosen as targets for this blind test. The first four targets, two rigid molecules, one semi-flexible molecule and a 1:1 salt, matched the criteria for the targets from CSP2007, while the last two targets belonged to two new challenging categories – a larger, much more flexible molecule and a hydrate with more than one polymorph. Each group submitted three predictions for each target it attempted. There was at least one successful prediction for each target, and two groups were able to successfully predict the structure of the large flexible molecule as their first place submission. The results show that while not as many groups successfully predicted the structures of the three smallest molecules as in CSP2007, there is now evidence that methodologies such as dispersion-corrected density functional theory (DFT-D) are able to reliably do so. The results also highlight the many challenges posed by more complex systems and show that there are still issues to be overcome. International Union of Crystallography 2011-12-01 2011-11-17 /pmc/articles/PMC3222142/ /pubmed/22101543 http://dx.doi.org/10.1107/S0108768111042868 Text en © David A. Bardwell et al. 2011 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Bardwell, David A. Adjiman, Claire S. Arnautova, Yelena A. Bartashevich, Ekaterina Boerrigter, Stephan X. M. Braun, Doris E. Cruz-Cabeza, Aurora J. Day, Graeme M. Della Valle, Raffaele G. Desiraju, Gautam R. van Eijck, Bouke P. Facelli, Julio C. Ferraro, Marta B. Grillo, Damian Habgood, Matthew Hofmann, Detlef W. M. Hofmann, Fridolin Jose, K. V. Jovan Karamertzanis, Panagiotis G. Kazantsev, Andrei V. Kendrick, John Kuleshova, Liudmila N. Leusen, Frank J. J. Maleev, Andrey V. Misquitta, Alston J. Mohamed, Sharmarke Needs, Richard J. Neumann, Marcus A. Nikylov, Denis Orendt, Anita M. Pal, Rumpa Pantelides, Constantinos C. Pickard, Chris J. Price, Louise S. Price, Sarah L. Scheraga, Harold A. van de Streek, Jacco Thakur, Tejender S. Tiwari, Siddharth Venuti, Elisabetta Zhitkov, Ilia K. Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test |
title | Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test |
title_full | Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test |
title_fullStr | Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test |
title_full_unstemmed | Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test |
title_short | Towards crystal structure prediction of complex organic compounds – a report on the fifth blind test |
title_sort | towards crystal structure prediction of complex organic compounds – a report on the fifth blind test |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3222142/ https://www.ncbi.nlm.nih.gov/pubmed/22101543 http://dx.doi.org/10.1107/S0108768111042868 |
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