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Automatic identification of angiogenesis in double stained images of liver tissue
BACKGROUND: To grow beyond certain size and reach oxygen and other essential nutrients, solid tumors trigger angiogenesis (neovascularization) by secreting various growth factors. Based on this fact, several researches proposed that density of newly formed vessels correlate with tumor malignancy. Ve...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3226185/ https://www.ncbi.nlm.nih.gov/pubmed/19811678 http://dx.doi.org/10.1186/1471-2105-10-S11-S13 |
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author | Mete, Mutlu Hennings, Leah Spencer, Horace J Topaloglu, Umit |
author_facet | Mete, Mutlu Hennings, Leah Spencer, Horace J Topaloglu, Umit |
author_sort | Mete, Mutlu |
collection | PubMed |
description | BACKGROUND: To grow beyond certain size and reach oxygen and other essential nutrients, solid tumors trigger angiogenesis (neovascularization) by secreting various growth factors. Based on this fact, several researches proposed that density of newly formed vessels correlate with tumor malignancy. Vessel density is known as a true prognostic indicator for several types of cancer. However, automated quantification of angiogenesis is still in its primitive stage, and deserves more intelligent methods by taking advantages accruing from novel computer algorithms. RESULTS: The newly introduced characteristics of subimages performed well in identification of region-of-angiogenesis. The proposed technique was tested on 522 samples collected from two high-resolution tissues. Having 0.90 overall f-measure, the results obtained with Support Vector Machines show significant agreement between automated framework and manual assessment of microvessels. CONCLUSION: This study introduces a new framework to identify angiogenesis to measure microvessel density (MVD) in digitalized images of liver cancer tissues. The objective is to recognize all subimages having new vessel formations. In addition to region based characteristics, a set of morphological features are proposed to differentiate positive and negative incidences. |
format | Online Article Text |
id | pubmed-3226185 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-32261852011-11-30 Automatic identification of angiogenesis in double stained images of liver tissue Mete, Mutlu Hennings, Leah Spencer, Horace J Topaloglu, Umit BMC Bioinformatics Proceedings BACKGROUND: To grow beyond certain size and reach oxygen and other essential nutrients, solid tumors trigger angiogenesis (neovascularization) by secreting various growth factors. Based on this fact, several researches proposed that density of newly formed vessels correlate with tumor malignancy. Vessel density is known as a true prognostic indicator for several types of cancer. However, automated quantification of angiogenesis is still in its primitive stage, and deserves more intelligent methods by taking advantages accruing from novel computer algorithms. RESULTS: The newly introduced characteristics of subimages performed well in identification of region-of-angiogenesis. The proposed technique was tested on 522 samples collected from two high-resolution tissues. Having 0.90 overall f-measure, the results obtained with Support Vector Machines show significant agreement between automated framework and manual assessment of microvessels. CONCLUSION: This study introduces a new framework to identify angiogenesis to measure microvessel density (MVD) in digitalized images of liver cancer tissues. The objective is to recognize all subimages having new vessel formations. In addition to region based characteristics, a set of morphological features are proposed to differentiate positive and negative incidences. BioMed Central 2009-10-08 /pmc/articles/PMC3226185/ /pubmed/19811678 http://dx.doi.org/10.1186/1471-2105-10-S11-S13 Text en Copyright ©2009 Mete et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Proceedings Mete, Mutlu Hennings, Leah Spencer, Horace J Topaloglu, Umit Automatic identification of angiogenesis in double stained images of liver tissue |
title | Automatic identification of angiogenesis in double stained images of liver tissue |
title_full | Automatic identification of angiogenesis in double stained images of liver tissue |
title_fullStr | Automatic identification of angiogenesis in double stained images of liver tissue |
title_full_unstemmed | Automatic identification of angiogenesis in double stained images of liver tissue |
title_short | Automatic identification of angiogenesis in double stained images of liver tissue |
title_sort | automatic identification of angiogenesis in double stained images of liver tissue |
topic | Proceedings |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3226185/ https://www.ncbi.nlm.nih.gov/pubmed/19811678 http://dx.doi.org/10.1186/1471-2105-10-S11-S13 |
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