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Automatic identification of angiogenesis in double stained images of liver tissue

BACKGROUND: To grow beyond certain size and reach oxygen and other essential nutrients, solid tumors trigger angiogenesis (neovascularization) by secreting various growth factors. Based on this fact, several researches proposed that density of newly formed vessels correlate with tumor malignancy. Ve...

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Detalles Bibliográficos
Autores principales: Mete, Mutlu, Hennings, Leah, Spencer, Horace J, Topaloglu, Umit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3226185/
https://www.ncbi.nlm.nih.gov/pubmed/19811678
http://dx.doi.org/10.1186/1471-2105-10-S11-S13
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author Mete, Mutlu
Hennings, Leah
Spencer, Horace J
Topaloglu, Umit
author_facet Mete, Mutlu
Hennings, Leah
Spencer, Horace J
Topaloglu, Umit
author_sort Mete, Mutlu
collection PubMed
description BACKGROUND: To grow beyond certain size and reach oxygen and other essential nutrients, solid tumors trigger angiogenesis (neovascularization) by secreting various growth factors. Based on this fact, several researches proposed that density of newly formed vessels correlate with tumor malignancy. Vessel density is known as a true prognostic indicator for several types of cancer. However, automated quantification of angiogenesis is still in its primitive stage, and deserves more intelligent methods by taking advantages accruing from novel computer algorithms. RESULTS: The newly introduced characteristics of subimages performed well in identification of region-of-angiogenesis. The proposed technique was tested on 522 samples collected from two high-resolution tissues. Having 0.90 overall f-measure, the results obtained with Support Vector Machines show significant agreement between automated framework and manual assessment of microvessels. CONCLUSION: This study introduces a new framework to identify angiogenesis to measure microvessel density (MVD) in digitalized images of liver cancer tissues. The objective is to recognize all subimages having new vessel formations. In addition to region based characteristics, a set of morphological features are proposed to differentiate positive and negative incidences.
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spelling pubmed-32261852011-11-30 Automatic identification of angiogenesis in double stained images of liver tissue Mete, Mutlu Hennings, Leah Spencer, Horace J Topaloglu, Umit BMC Bioinformatics Proceedings BACKGROUND: To grow beyond certain size and reach oxygen and other essential nutrients, solid tumors trigger angiogenesis (neovascularization) by secreting various growth factors. Based on this fact, several researches proposed that density of newly formed vessels correlate with tumor malignancy. Vessel density is known as a true prognostic indicator for several types of cancer. However, automated quantification of angiogenesis is still in its primitive stage, and deserves more intelligent methods by taking advantages accruing from novel computer algorithms. RESULTS: The newly introduced characteristics of subimages performed well in identification of region-of-angiogenesis. The proposed technique was tested on 522 samples collected from two high-resolution tissues. Having 0.90 overall f-measure, the results obtained with Support Vector Machines show significant agreement between automated framework and manual assessment of microvessels. CONCLUSION: This study introduces a new framework to identify angiogenesis to measure microvessel density (MVD) in digitalized images of liver cancer tissues. The objective is to recognize all subimages having new vessel formations. In addition to region based characteristics, a set of morphological features are proposed to differentiate positive and negative incidences. BioMed Central 2009-10-08 /pmc/articles/PMC3226185/ /pubmed/19811678 http://dx.doi.org/10.1186/1471-2105-10-S11-S13 Text en Copyright ©2009 Mete et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Proceedings
Mete, Mutlu
Hennings, Leah
Spencer, Horace J
Topaloglu, Umit
Automatic identification of angiogenesis in double stained images of liver tissue
title Automatic identification of angiogenesis in double stained images of liver tissue
title_full Automatic identification of angiogenesis in double stained images of liver tissue
title_fullStr Automatic identification of angiogenesis in double stained images of liver tissue
title_full_unstemmed Automatic identification of angiogenesis in double stained images of liver tissue
title_short Automatic identification of angiogenesis in double stained images of liver tissue
title_sort automatic identification of angiogenesis in double stained images of liver tissue
topic Proceedings
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3226185/
https://www.ncbi.nlm.nih.gov/pubmed/19811678
http://dx.doi.org/10.1186/1471-2105-10-S11-S13
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