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The Environmental Polymorphism Registry: A Unique Resource that Facilitates Translational Research of Environmental Disease

Background: Dissecting complex disease has become more feasible because of the availability of large-scale DNA resources and advances in high-throughput genomic technology. Although these tools help scientists identify potential susceptibility loci, subjects with relevant genotypes are needed for cl...

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Autores principales: Chulada, Patricia C., Vainorius, Enrikas, Garantziotis, Stavros, Burch, Lauranell H., Blackshear, Perry J., Zeldin, Darryl C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Institute of Environmental Health Sciences 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3226495/
https://www.ncbi.nlm.nih.gov/pubmed/21659040
http://dx.doi.org/10.1289/ehp.1003348
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author Chulada, Patricia C.
Vainorius, Enrikas
Garantziotis, Stavros
Burch, Lauranell H.
Blackshear, Perry J.
Zeldin, Darryl C.
author_facet Chulada, Patricia C.
Vainorius, Enrikas
Garantziotis, Stavros
Burch, Lauranell H.
Blackshear, Perry J.
Zeldin, Darryl C.
author_sort Chulada, Patricia C.
collection PubMed
description Background: Dissecting complex disease has become more feasible because of the availability of large-scale DNA resources and advances in high-throughput genomic technology. Although these tools help scientists identify potential susceptibility loci, subjects with relevant genotypes are needed for clinical phenotyping and toxicity studies. Objective: We have developed a resource of subjects and their DNA to use for translational research of environmental disease. Methods: More than 15,000 individuals of diverse sex, age, race, and ethnicity were recruited from North Carolina. DNA was isolated from their blood and coded with personal identification numbers linked to their identities. This linked resource of subjects and their DNA—the Environmental Polymorphism Registry (EPR)—allows scientists to screen for individuals with genotypes of interest and invite them to participate in follow-up studies. Discussion: The EPR is a phenotype-by-genotype resource designed to facilitate translational studies of environmental disease. Based on their genotypes, subjects are invited to participate at all levels of research, from basic laboratory ex vivo cell phenotyping experiments that require viable tissue to in vivo observational studies and clinical trials. Here we report on progress of the EPR since 2008. We also describe a major effort at the National Institute of Environmental Health Sciences (NIEHS) to investigate susceptibility loci in 87 environmental response genes and gene × environment interactions using EPR resources. Conclusion: The EPR is a unique and novel resource and is ideal for genotype-driven translational research of environmental disease. We expect that it will serve as a model for future resources. Such tools help scientists attain their ultimate goals: to identify at-risk populations and develop strategies for preventing and treating human disease.
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spelling pubmed-32264952012-01-04 The Environmental Polymorphism Registry: A Unique Resource that Facilitates Translational Research of Environmental Disease Chulada, Patricia C. Vainorius, Enrikas Garantziotis, Stavros Burch, Lauranell H. Blackshear, Perry J. Zeldin, Darryl C. Environ Health Perspect Commentary Background: Dissecting complex disease has become more feasible because of the availability of large-scale DNA resources and advances in high-throughput genomic technology. Although these tools help scientists identify potential susceptibility loci, subjects with relevant genotypes are needed for clinical phenotyping and toxicity studies. Objective: We have developed a resource of subjects and their DNA to use for translational research of environmental disease. Methods: More than 15,000 individuals of diverse sex, age, race, and ethnicity were recruited from North Carolina. DNA was isolated from their blood and coded with personal identification numbers linked to their identities. This linked resource of subjects and their DNA—the Environmental Polymorphism Registry (EPR)—allows scientists to screen for individuals with genotypes of interest and invite them to participate in follow-up studies. Discussion: The EPR is a phenotype-by-genotype resource designed to facilitate translational studies of environmental disease. Based on their genotypes, subjects are invited to participate at all levels of research, from basic laboratory ex vivo cell phenotyping experiments that require viable tissue to in vivo observational studies and clinical trials. Here we report on progress of the EPR since 2008. We also describe a major effort at the National Institute of Environmental Health Sciences (NIEHS) to investigate susceptibility loci in 87 environmental response genes and gene × environment interactions using EPR resources. Conclusion: The EPR is a unique and novel resource and is ideal for genotype-driven translational research of environmental disease. We expect that it will serve as a model for future resources. Such tools help scientists attain their ultimate goals: to identify at-risk populations and develop strategies for preventing and treating human disease. National Institute of Environmental Health Sciences 2011-06-09 2011-11 /pmc/articles/PMC3226495/ /pubmed/21659040 http://dx.doi.org/10.1289/ehp.1003348 Text en http://creativecommons.org/publicdomain/mark/1.0/ Publication of EHP lies in the public domain and is therefore without copyright. All text from EHP may be reprinted freely. Use of materials published in EHP should be acknowledged (for example, ?Reproduced with permission from Environmental Health Perspectives?); pertinent reference information should be provided for the article from which the material was reproduced. Articles from EHP, especially the News section, may contain photographs or illustrations copyrighted by other commercial organizations or individuals that may not be used without obtaining prior approval from the holder of the copyright.
spellingShingle Commentary
Chulada, Patricia C.
Vainorius, Enrikas
Garantziotis, Stavros
Burch, Lauranell H.
Blackshear, Perry J.
Zeldin, Darryl C.
The Environmental Polymorphism Registry: A Unique Resource that Facilitates Translational Research of Environmental Disease
title The Environmental Polymorphism Registry: A Unique Resource that Facilitates Translational Research of Environmental Disease
title_full The Environmental Polymorphism Registry: A Unique Resource that Facilitates Translational Research of Environmental Disease
title_fullStr The Environmental Polymorphism Registry: A Unique Resource that Facilitates Translational Research of Environmental Disease
title_full_unstemmed The Environmental Polymorphism Registry: A Unique Resource that Facilitates Translational Research of Environmental Disease
title_short The Environmental Polymorphism Registry: A Unique Resource that Facilitates Translational Research of Environmental Disease
title_sort environmental polymorphism registry: a unique resource that facilitates translational research of environmental disease
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3226495/
https://www.ncbi.nlm.nih.gov/pubmed/21659040
http://dx.doi.org/10.1289/ehp.1003348
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