Cargando…

Comparative analysis of neural transcriptomes and functional implication of unannotated intronic expression

BACKGROUND: The transcriptome and its regulation bridge the genome and the phenome. Recent RNA-seq studies unveiled complex transcriptomes with previously unknown transcripts and functions. To investigate the characteristics of neural transcriptomes and possible functions of previously unknown trans...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sun, Yazhou, Wang, Yaqiong, Hu, Yi, Chen, Gong, Ma, Hong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228559/ https://www.ncbi.nlm.nih.gov/pubmed/21985610 http://dx.doi.org/10.1186/1471-2164-12-494

Ejemplares similares

Discovering Functions of Unannotated Genes from a Transcriptome Survey of Wild Fungal Isolates
por: Ellison, Christopher E., et al.
Publicado: (2014)

Identification of Unannotated Small Genes in Salmonella
por: Baek, Jonghwan, et al.
Publicado: (2017)

Predicting Breast Cancer Gene Expression Signature by Applying Deep Convolutional Neural Networks From Unannotated Pathological Images
por: Phan, Nam Nhut, et al.
Publicado: (2021)

Unannotated microprotein EMBOW regulates the interactome and chromatin and mitotic functions of WDR5
por: Chen, Yanran, et al.
Publicado: (2023)

Transcriptomic meta-analysis reveals unannotated long non-coding RNAs related to the immune response in sheep
por: Bilbao-Arribas, Martin, et al.
Publicado: (2022)

Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing
por: Coleman, Stephen J., et al.
Publicado: (2013)

Automated acquisition of explainable knowledge from unannotated histopathology images
por: Yamamoto, Yoichiro, et al.
Publicado: (2019)

Correction: Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing
por: Coleman, Stephen J., et al.
Publicado: (2013)

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics
por: von Grotthuss, Marcin, et al.
Publicado: (2006)

Identification of two unannotated miRNAs in classic Hodgkin lymphoma cell lines
por: Ustaszewski, Adam, et al.
Publicado: (2023)

Transcriptome Analysis Reveals That SREBP Modulates a Large Repertoire of Genes Involved in Key Cellular Functions in Penaeus vannamei, although the Majority of the Dysregulated Genes Are Unannotated
por: Zheng, Xiaoyu, et al.
Publicado: (2022)

Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning
por: Harris, Cole, et al.
Publicado: (2008)

Protein evidence of unannotated ORFs in Drosophila reveals diversity in the evolution and properties of young proteins
por: Zheng, Eric B, et al.
Publicado: (2022)

Unannotated Open Reading Frame in Saccharomyces cerevisiae Encodes Protein Localizing to the Endoplasmic Reticulum
por: Chang, Scott, et al.
Publicado: (2023)

Introns: The Functional Benefits of Introns in Genomes
por: Jo, Bong-Seok, et al.
Publicado: (2015)

Ori-Finder: A web-based system for finding oriCs in unannotated bacterial genomes
por: Gao, Feng, et al.
Publicado: (2008)

Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing
por: Abnousi, Armen, et al.
Publicado: (2018)

Chemical labeling and proteomics for characterization of unannotated small and alternative open reading frame-encoded polypeptides
por: Chen, Yanran, et al.
Publicado: (2023)

Phase distribution of spliceosomal introns: implications for intron origin
por: Nguyen, Hung D, et al.
Publicado: (2006)

Widespread intron retention in mammals functionally tunes transcriptomes
por: Braunschweig, Ulrich, et al.
Publicado: (2014)

RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network
por: Wang, Peggy I, et al.
Publicado: (2012)

Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments
por: ÓhÉigeartaigh, Seán S, et al.
Publicado: (2011)

Prospecting for Unannotated Enzymes: Discovery of a 3′,5′-Nucleotide Bisphosphate Phosphatase within the Amidohydrolase Superfamily
por: Cummings, Jennifer A., et al.
Publicado: (2014)

Leveraging omic features with F3UTER enables identification of unannotated 3’UTRs for synaptic genes
por: Sethi, Siddharth, et al.
Publicado: (2022)

False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions
por: Pickrell, Joseph K., et al.
Publicado: (2011)

PlantIntronDB: a database for plant introns that host functional elements
por: Wang, Weiping, et al.
Publicado: (2023)

Cross-species mapping of bidirectional promoters enables prediction of unannotated 5' UTRs and identification of species-specific transcripts
por: Piontkivska, Helen, et al.
Publicado: (2009)

Human endogenous retroviruses sustain complex and cooperative regulation of gene-containing loci and unannotated megabase-sized regions
por: Sokol, Martin, et al.
Publicado: (2015)

Expert-level detection of pathologies from unannotated chest X-ray images via self-supervised learning
por: Tiu, Ekin, et al.
Publicado: (2022)

IdentiCS – Identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence
por: Sun, Jibin, et al.
Publicado: (2004)

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.)
por: Mizuno, Hiroshi, et al.
Publicado: (2010)

Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
por: Nellore, Abhinav, et al.
Publicado: (2016)

Unannotated single nucleotide polymorphisms in the TATA box of erythropoiesis genes show in vitro positive involvements in cognitive and mental disorders
por: Ponomarenko, Mikhail, et al.
Publicado: (2020)

The Function of Introns
por: Chorev, Michal, et al.
Publicado: (2012)

MSALigMap—A Tool for Mapping Active-Site Amino Acids in PDB Structures onto Known and Novel Unannotated Homologous Sequences with Similar Function
por: Hassan, Sameer, et al.
Publicado: (2022)

OpenCustomDB: Integration of Unannotated Open Reading Frames and Genetic Variants to Generate More Comprehensive Customized Protein Databases
por: Guilloy, Noé, et al.
Publicado: (2023)

Variations of intronic branchpoint motif: identification and functional implications in splicing and disease
por: Xie, Jiuyong, et al.
Publicado: (2023)

Evolution of group I introns in Porifera: new evidence for intron mobility and implications for DNA barcoding
por: Schuster, Astrid, et al.
Publicado: (2017)

Identification of unannotated exons of low abundance transcripts in Drosophila melanogaster and cloning of a new serine protease gene upregulated upon injury
por: Maia, Rafaela M, et al.
Publicado: (2007)

groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data
por: Chae, Minho, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_fd2k0ulfhf1s8fce4653d1aqbc