Cargando…

Next-generation DNA sequencing-based assay for measuring allelic expression imbalance (AEI) of candidate neuropsychiatric disorder genes in human brain

BACKGROUND: Common genetic variants that regulate gene expression are widely suspected to contribute to the etiology and phenotypic variability of complex diseases. Although high-throughput, microarray-based assays have been developed to measure differences in mRNA expression among independent sampl...

Descripción completa

Detalles Bibliográficos
Autores principales:	Xu, Xiang, Wang, Hao, Zhu, Min, Sun, Yue, Tao, Yu, He, Qin, Wang, Jian, Chen, Li, Saffen, David
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228908/ https://www.ncbi.nlm.nih.gov/pubmed/22013986 http://dx.doi.org/10.1186/1471-2164-12-518

Ejemplares similares

Natural Selection on Exonic SNPs Shapes Allelic Expression Imbalance (AEI) Adaptability in Lung Cancer Progression
por: Huang, Jinfei, et al.
Publicado: (2020)

Indicators of AEI Applied to the Delaware Estuary
por: Barnthouse, Lawrence W., et al.
Publicado: (2002)

DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing
por: Castle, John C, et al.
Publicado: (2010)

Allelic imbalance at the HER2/TOP2A locus in breast cancer
por: Huijsmans, Cornelis J. J., et al.
Publicado: (2015)

Improvement in detection of minor alleles in next generation sequencing by base quality recalibration
por: Ni, Shengyu, et al.
Publicado: (2016)

Can-Seq: a PCR and DNA sequencing strategy for identifying new alleles of known and candidate genes
por: Cao, Jiangling, et al.
Publicado: (2020)

A flexible Bayesian method for detecting allelic imbalance in RNA-seq data
por: León-Novelo, Luis G, et al.
Publicado: (2014)

Esterification of Acetic Acid by Flow-Type Membrane Reactor with AEI Zeolite Membrane
por: Sekine, Yuma, et al.
Publicado: (2023)

HLA genotyping by next-generation sequencing of complementary DNA
por: Segawa, Hidenobu, et al.
Publicado: (2017)

Allele-specific expression assays using Solexa
por: Main, Bradley J, et al.
Publicado: (2009)

The investigation of the NH(3)-SCR performance of a copper-based AEI-CHA intergrown zeolite catalyst
por: Ye, Hongling, et al.
Publicado: (2022)

Co-extraction of genomic DNA & total RNA from recalcitrant woody tissues for next-generation sequencing studies
por: Zeng, Zhen, et al.
Publicado: (2018)

BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks
por: Pongor, Lorinc S., et al.
Publicado: (2020)

ITR-Seq, a next-generation sequencing assay, identifies genome-wide DNA editing sites in vivo following adeno-associated viral vector-mediated genome editing
por: Breton, Camilo, et al.
Publicado: (2020)

Development and evaluation of a non-ribosomal random PCR and next-generation sequencing based assay for detection and sequencing of hand, foot and mouth disease pathogens
por: Nguyen, Anh To, et al.
Publicado: (2016)

Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species
por: Healey, Adam, et al.
Publicado: (2014)

A hidden Markov approach for ascertaining cSNP genotypes from RNA sequence data in the presence of allelic imbalance by exploiting linkage disequilibrium
por: Steibel, Juan P, et al.
Publicado: (2015)

A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data
por: González, Juan R, et al.
Publicado: (2011)

Exome-wide DNA capture and next generation sequencing in domestic and wild species
por: Cosart, Ted, et al.
Publicado: (2011)

DNA capture and next-generation sequencing can recover whole mitochondrial genomes from highly degraded samples for human identification
por: Templeton, Jennifer E L, et al.
Publicado: (2013)

Application of next-generation sequencing for 24-chromosome aneuploidy screening of human preimplantation embryos
por: Zheng, Haiyan, et al.
Publicado: (2015)

Estimating Allele Frequency from Next-Generation Sequencing of Pooled Mitochondrial DNA Samples
por: Wang, Tao, et al.
Publicado: (2011)

Methylation-capture and Next-Generation Sequencing of free circulating DNA from human plasma
por: Warton, Kristina, et al.
Publicado: (2014)

Development of super-specific epigenome editing by targeted allele-specific DNA methylation
por: Rajaram, Nivethika, et al.
Publicado: (2023)

Next generation sequencing and de novo transcriptomics to study gene evolution
por: Jayasena, Achala S, et al.
Publicado: (2014)

A simple method to estimate the in-house limit of detection for genetic mutations with low allele frequencies in whole-exome sequencing analysis by next-generation sequencing
por: Miura, Takumi, et al.
Publicado: (2021)

Quantitation of next generation sequencing library preparation protocol efficiencies using droplet digital PCR assays - a systematic comparison of DNA library preparation kits for Illumina sequencing
por: Aigrain, Louise, et al.
Publicado: (2016)

Identification of piggyBac-mediated insertions in Plasmodium berghei by next generation sequencing
por: Cao, Yi, et al.
Publicado: (2013)

Next generation sequencing based in-house HIV genotyping method: validation report
por: Ayitewala, Alisen, et al.
Publicado: (2021)

Generation and identification of a conditional knockout allele for the PSMD11 gene in mice
por: Zhao, Linlin, et al.
Publicado: (2021)

An improved Diagnostic PCR Assay for identification of Cryptic Heterozygosity for CGG Triplet Repeat Alleles in the Fragile X Gene (FMR1)
por: Khaniani, Mahmoud S, et al.
Publicado: (2008)

Development of a TaqMan Allelic Discrimination Assay for detection of Single Nucleotides Polymorphisms associated with anti-malarial drug resistance
por: Kamau, Edwin, et al.
Publicado: (2012)

Allele-specific copy number profiling by next-generation DNA sequencing
por: Chen, Hao, et al.
Publicado: (2015)

A high-throughput method for quantifying alleles and haplotypes of the malaria vaccine candidate Plasmodium falciparum merozoite surface protein-1 19 kDa
por: Takala, Shannon L, et al.
Publicado: (2006)

Human primary osteoclasts: in vitro generation and applications as pharmacological and clinical assay
por: Susa, Mira, et al.
Publicado: (2004)

Next generation sequencing of viral RNA genomes
por: Marston, Denise A, et al.
Publicado: (2013)

Prediction of smoking by multiplex bisulfite PCR with long amplicons considering allele-specific effects on DNA methylation
por: Kondratyev, Nikolay, et al.
Publicado: (2018)

Investigating the relationship between predictability and imbalance in minimisation: a simulation study
por: McPherson, Gladys C, et al.
Publicado: (2013)

Data analysis issues for allele-specific expression using Illumina's GoldenGate assay
por: Ritchie, Matthew E, et al.
Publicado: (2010)

Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing
por: Masser, Dustin R, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_n3h1cd5gm3m76hloehk3uk44er