Cargando…

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

BACKGROUND: One of the goals of livestock genomics research is to identify the genetic differences responsible for variation in phenotypic traits, particularly those of economic importance. Characterizing the genetic variation in livestock species is an important step towards linking genes or genomi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Stothard, Paul, Choi, Jung-Woo, Basu, Urmila, Sumner-Thomson, Jennifer M, Meng, Yan, Liao, Xiaoping, Moore, Stephen S
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3229636/ https://www.ncbi.nlm.nih.gov/pubmed/22085807 http://dx.doi.org/10.1186/1471-2164-12-559

Ejemplares similares

Whole genome sequencing of simmental cattle for SNP and CNV discovery
por: Sun, Ting, et al.
Publicado: (2023)

CNV discovery for milk composition traits in dairy cattle using whole genome resequencing
por: Gao, Yahui, et al.
Publicado: (2017)

High density linkage disequilibrium maps of chromosome 14 in Holstein and Angus cattle
por: Marques, Elisa, et al.
Publicado: (2008)

Whole-Genome Resequencing of Holstein Bulls for Indel Discovery and Identification of Genes Associated with Milk Composition Traits in Dairy Cattle
por: Jiang, Jianping, et al.
Publicado: (2016)

Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity
por: Lee, Kyung-Tai, et al.
Publicado: (2013)

In-depth annotation of SNPs arising from resequencing projects using NGS-SNP
por: Grant, Jason R., et al.
Publicado: (2011)

Comparative characteristics of the genetic structure of the Syrian cattle breed compared to Holstein and Aberdeen-Angus breeds
por: Alsalh, Mohammad Almohammad, et al.
Publicado: (2021)

Linkage disequilibrium in Angus, Charolais, and Crossbred beef cattle
por: Lu, Duc, et al.
Publicado: (2012)

An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle
por: MacEachern, Sean, et al.
Publicado: (2009)

Whole-Genome Analyses of Korean Native and Holstein Cattle Breeds by Massively Parallel Sequencing
por: Choi, Jung-Woo, et al.
Publicado: (2014)

In utero choline exposure alters growth, metabolism, feed efficiency, and carcass characteristics of Holstein × Angus cattle from weaning to slaughter
por: Brown, William E, et al.
Publicado: (2023)

Deriving Gene Networks from SNP Associated with Triacylglycerol and Phospholipid Fatty Acid Fractions from Ribeyes of Angus Cattle
por: Buchanan, Justin W., et al.
Publicado: (2016)

PRNP Haplotype Associated with Classical BSE Incidence in European Holstein Cattle
por: Murdoch, Brenda M., et al.
Publicado: (2010)

Effect of Combining Multiple CNV Defining Algorithms on the Reliability of CNV Calls from SNP Genotyping Data
por: Kim, Soon-Young, et al.
Publicado: (2012)

Whole genome analysis of infectious bovine keratoconjunctivitis in Angus cattle using Bayesian threshold models
por: Kizilkaya, Kadir, et al.
Publicado: (2011)

Candidate lethal haplotypes and causal mutations in Angus cattle
por: Hoff, Jesse L., et al.
Publicado: (2017)

Genomic Analysis of Heterosis in an Angus × Hereford Cattle Population
por: Hay, El Hamidi, et al.
Publicado: (2023)

Discovery of SNP Molecular Markers and Candidate Genes Associated with Sacbrood Virus Resistance in Apis cerana cerana Larvae by Whole-Genome Resequencing
por: Hassanyar, Aqai Kalan, et al.
Publicado: (2023)

Scanning and Filling: Ultra-Dense SNP Genotyping Combining Genotyping-By-Sequencing, SNP Array and Whole-Genome Resequencing Data
por: Torkamaneh, Davoud, et al.
Publicado: (2015)

SNV discovery and functional candidate gene identification for milk composition based on whole genome resequencing of Holstein bulls with extremely high and low breeding values
por: Lin, Shan, et al.
Publicado: (2019)

cnvCapSeq: detecting copy number variation in long-range targeted resequencing data
por: Bellos, Evangelos, et al.
Publicado: (2014)

Genome-wide SNP discovery from a pooled sample of accessions of the biofuel plant Jatropha curcas based on whole-transcriptome Illumina resequencing
por: Silva-Junior, Orzenil B, et al.
Publicado: (2011)

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
por: Hyten, David L, et al.
Publicado: (2010)

Whole-Genome Resequencing of Xiangxi Cattle Identifies Genomic Diversity and Selection Signatures
por: Luo, Xiaoyu, et al.
Publicado: (2022)

Genetic Diversity and Selective Signature in Dabieshan Cattle Revealed by Whole-Genome Resequencing
por: Guan, Xiwen, et al.
Publicado: (2022)

Whole-Genome Resequencing Reveals Selection Signatures of Abigar Cattle for Local Adaptation
por: Ayalew, Wondossen, et al.
Publicado: (2023)

Comparison of reducing sugar content, sensory traits, and fatty acids and volatile compound profiles of the longissimus thoracis among Korean cattle, Holsteins, and Angus steers
por: Piao, Min Yu, et al.
Publicado: (2019)

Correction: SNV discovery and functional candidate gene identification for milk composition based on whole genome resequencing of Holstein bulls with extremely high and low breeding values
por: Lin, Shan, et al.
Publicado: (2019)

Genome-wide association analysis for feed efficiency in Angus cattle
por: Rolf, M M, et al.
Publicado: (2012)

The Influence of Temperament on Body Temperature Response to Handling in Angus Cattle
por: Lees, Angela M., et al.
Publicado: (2020)

Composition of Fecal Microbiota in Grazing and Feedlot Angus Beef Cattle
por: Zhang, Zhimin, et al.
Publicado: (2021)

Characterizing Foot and Leg Scores for Montana’s Registered Angus Cattle
por: Sitz, Taylre, et al.
Publicado: (2023)

Variant discovery in targeted resequencing using whole genome amplified DNA
por: Indap, Amit R, et al.
Publicado: (2013)

Discovery of Gene Sources for Economic Traits in Hanwoo by Whole-genome Resequencing
por: Shin, Younhee, et al.
Publicado: (2016)

Whole genome SNP genotype piecemeal imputation
por: Wang, Yining, et al.
Publicado: (2015)

Resequencing and SNP discovery of Amur ide (Leuciscus waleckii) provides insights into local adaptations to extreme environments
por: Wang, Shuangyi, et al.
Publicado: (2021)

GStream: Improving SNP and CNV Coverage on Genome-Wide Association Studies
por: Alonso, Arnald, et al.
Publicado: (2013)

Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle
por: Nayeri, Shadi, et al.
Publicado: (2016)

Association of selected SNP with carcass and taste panel assessed meat quality traits in a commercial population of Aberdeen Angus-sired beef cattle
por: Gill, Jennifer L, et al.
Publicado: (2009)

Differential responsiveness of Holstein and Angus dermal fibroblasts to LPS challenge occurs without major differences in the methylome
por: Benjamin, Aimee L., et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_4824qd7augit47rleu8itpua3o